Paralichthys olivaceus (Japanese flounder): 109625073
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Entry
109625073 CDS
T06037
Symbol
ercc3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03022
Basal transcription factors
pov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109625073 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
109625073 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pov03021
]
109625073 (ercc3)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109625073 (ercc3)
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109625073 (ercc3)
Transcription machinery [BR:
pov03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109625073 (ercc3)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109625073 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
109625073
NCBI-ProteinID:
XP_019935703
LinkDB
All DBs
Position
Unknown
AA seq
784 aa
AA seq
DB search
MGKRDKGDRESKKSKKRFHDDDDDEEEAGGSESQEAIPAAAGKQVDESSTKLDEYGAKDY
RAQMLLKNDHNSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHIHEYKLTAY
SLYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIQLCTVSYGKVKLVLKHNRYFVESAF
PDVIQRLLQDNVIRECRLRTADGADTELITEVIHSKSAISKSVSEKGGTSNSQQPSEGQT
STQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRN
DTVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRK
RCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKR
SWEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVD
LNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKSKKRILLYTMNPN
KFRACQFLIRFHERRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHN
PKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYF
YSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMDEEDLMFSSRDEQQQLLQKVLAA
SDLDAEEEVVAGEVGGRPQFSRRMGTMSSMSGADDTVYMEYQSRGSKASSLLKSVHPLFK
RFRK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaagagacaaaggagaccgcgagtccaaaaagtccaagaagcgtttccacgat
gacgatgacgatgaggaagaggccgggggcagcgagtctcaggaggccatacccgctgcc
gcagggaaacaagtggatgagtccagcacgaaactggatgagtatggagccaaagactac
cgagctcagatgctgctgaagaacgatcacaattcacggcccctctgggtggccccagat
ggtcacatcttcctggaggccttctcaccggtgtataagtacgcccaggatttcttggtg
gccatcgcagagccggtgtgcaggccgaaccacatccacgagtacaagctgacggcctac
tctctgtatgcagctgtcagtgtggggctgcagacctctgacattgtggagtacctgcag
aaactcagcaagacgtctgtacctgatggaatcgtgcagtttatccagctctgcacagtg
agctacggaaaagtcaagctggtgctcaagcacaacagatactttgttgagagtgccttc
cccgatgtgatccagcgtctcctgcaggacaatgtgatccgtgaatgtcgtctcaggact
gcagatggcgcagacactgagcttattactgaagtcatccacagcaagtcagcgatctcg
aagtctgtttcggaaaagggaggtacgtccaactcacagcagcccagcgaaggacaaact
tctacccagcaagtccctgaggacatcttcagctactatgaacagatggataaagaggag
gaggaggaggaggagactcagacggtttcctttgagattcgccaggagatgatcgaagag
ctgcagaagcgttgcattcagctagagtaccccctcctggcagagtacgactttcgcaat
gatactgtcaacccggacatcaacatagacctgaagcccaccgctgtgctgcggccctac
caggaaaagagtctgcgcaagatgtttggaaatggacgtgctcgttctggggtcatcgtg
ctgccctgcggagctggcaaatctctggtgggtgtgacagcagcgtgcacggtgcgtaaa
cgctgcctggtgctgggtaactcctcggtgtcagtggagcagtggaaggcccagtttaag
atgtggtccacaatcgatgactctcagatctgccgcttcacgtccgacgccaaggacaaa
cccatcggctgctcggtggccatcagcacctactccatgctgggtcacaccaccaagcgc
tcctgggaggccgagagggtcatggagtggatgcggagccaggagtggggactcatcatc
ctggacgaggtgcacactatccccgccaagatgtttcgtcgtgttctgaccattgtccag
gcccactgcaaactggggctcactgccacactggtcagggaggacgacaagattgtggac
ctcaacttcttaatagggccaaagctgtatgaggcgaactggatggaactgcagaacaat
ggctacatcgctaaagtccagtgtgctgaggtttggtgcccgatgtctccagagttctac
agggagtacgtggccattaagtcaaagaagcgcatcctgctttataccatgaaccccaat
aagttccgtgcctgccagtttctcattcgctttcatgagcgccgtaatgacaagatcatg
gtctttgctgacaacgtctttgccctgaaggaatacgctattcgcctcaacaaaccttac
atctatggtccaacatctcagggggagcgaatgcagattttacagaactttaaacacaac
cctaagatcaacaccattttcatctccaaggttggagacacatcatttgacttgccagaa
gccaatgttctgatccagatctcctcccatggtgggtcacgcaggcaggaggcccagagg
cttggtagagtcttacgagccaagaaaggaatggtcgcagaggagtacaatgcctacttc
tattcgctggtgtcccaggacacacaggagatggcttactccaccaagaggcagagattc
ttggtggaccagggctacagctttaaggtcatcacgaagttggcaggtatggatgaagaa
gacttgatgttttccagcagagatgagcaacagcagctgctgcagaaggtcctcgctgcg
tcagacctggatgctgaggaggaagtggtggcgggggaggtgggcggacgaccacagttc
tcgaggcgaatgggcaccatgagctccatgtctggtgcagatgacactgtctacatggaa
tatcaaagcagaggcagcaaagcgtcctcgttgctcaagagcgttcatccgctgttcaag
cgcttcagaaagtag
DBGET
integrated database retrieval system
