Paralichthys olivaceus (Japanese flounder): 109627510
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Entry
109627510 CDS
T06037
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109627510 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pov03021
]
109627510 (taf5)
03036 Chromosome and associated proteins [BR:
pov03036
]
109627510 (taf5)
Transcription machinery [BR:
pov03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109627510 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
109627510 (taf5)
Chromosome and associated proteins [BR:
pov03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109627510 (taf5)
STAGA complex
109627510 (taf5)
TFTC complex
109627510 (taf5)
SAGA complex
109627510 (taf5)
SLIK complex
109627510 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD_LRWD1
PEP5_VPS11_N
Beta-prop_DCAF12
Beta-prop_Nup120_160
CDK5RAP3
PROPPIN
VPS8_N
LisH_TPL
LisH_PAC1
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
109627510
NCBI-ProteinID:
XP_019939598
LinkDB
All DBs
Position
Unknown
AA seq
748 aa
AA seq
DB search
MAAVQGGVVDADEEKDIKSEPSSDGWGNNNASDGRVLSASPGSSAPAVGNKPAAGTPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLKGADSSGAGSGGAAGSGDAEGADASSL
LSRVTVTSSAGVQAPTKATAGEDQPDVNVVLSAYSQQGDPALYQVYYSGLKRFIETVLDC
HRAELSQVFYPLFVHMYLELVYNNHESEAKAFFDKFSGDQECYYEDDMRILSSLTKKEHM
RGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGIPRSKSQ
IDAMSGSLAGETKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSMG
SKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLNAYQ
GLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEK
TASESKILHGHSGPVYGISFSPDRNYLLSSSEDCTVRLWSLLTFTCLVGYKGHNYPVWDT
QFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADITCTRFHPNSNYVATGSSDRTI
RLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMFAELKGHT
DTVYSLKFSRDGEILASGSMDNTVRLWDALKAFDDLETDDFTATTGHIHLQENSQELLLG
TYITKSSPVIHLHFTRRNLLLAAGAYNP
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtgtggtcgacgcggatgaagaaaaggacattaaatcggaa
ccatcgagcgatggctggggaaacaacaatgcgagcgacgggagggtgctctctgcgtcg
ccgggctccagcgctccggccgtgggcaacaaacccgcggcgggaaccccggaggaccag
cagaccttgctggcggtgctgcagttcctcaggaagaacaaactcaccgagtctgtggaa
attctgcgtcgcgaagcgggactaccggaggattcactgaagggggctgactcctccggg
gcaggctcgggaggtgctgccggcagtggggacgcagaaggcgcggatgcgagctctctg
ctgagccgggttaccgtgacatcctcagccggagtccaggcgccaacaaaagcaacagca
ggggaggatcagccagacgtcaacgtggtgctgtcagcgtacagccagcagggagacccg
gctctgtaccaggtttactacagcggcctgaagaggttcatagagacggttctggactgt
cacagagcagaactgtctcaggtcttctacccgctgtttgtacacatgtatctggagctg
gtgtacaacaatcatgaaagtgaggccaaggctttctttgacaagtttagtggggaccag
gagtgttattatgaagatgacatgcgcattttgtctagcctaacaaagaaggagcacatg
agaggcaatgagacactccttgacttccgcaccagcaagtttgtcctgcgcatctctcgc
gactcttaccagctgctgaagagacacctgcaggagcgtcagaacaaccagatctggaat
attatccaagagcatctctacatcgacatctttgatggcattccacgcagcaagagccag
attgatgccatgtctggcagcttggcaggagagactaagcgagaggccaacaaggcgaag
gtctactatggattgctgaaggaaccggaaatagagcttccacttgatgatgaggatgag
gaggcagagaatgaggagggtaaacccaagaagaagaaaccaaaaaaggacagcatgggc
tccaagagcaagaagcaggatcctaatgcaccttctcaaactaggatacctttgccagaa
cttaaggactcagacaaactggataagatcatgtacatgaaagaggccaccaagaggatc
cgcctgggaccagataacctcccctccatctgcttctactcttttctaaatgcatatcag
ggtttgactgcggtggacttcacagatgactccagcctgattgcaggaggctttgccgac
tcaacggtacgggtttggagcgtcacaccgaaaaagcttcgcaaggtcaagtctgcagca
gacttgaatctgattgacaaagagtcggacgatgtgctggagaggattatggacgagaag
actgccagtgagtcaaagatcctccacggacacagcggcccagtgtatggtatcagcttc
agcccagacagaaactacttgttgtcaagctcagaagactgtacggtcaggctgtggagt
ctcctaacatttacatgtctagtaggctacaagggccacaattatccagtgtgggacact
cagttttctccccatgggtactattttatctccggaggacatgacagagttgcccgtctg
tgggccacagaccactaccagcctctacggatgttttctggtcatctagctgacatcacc
tgcacccgttttcatcccaactccaattatgtagctacagggtcgtcggaccgcaccatc
cgcctctgggatgtcctgaacggaaactgcgtccgtatattcactggtcataagggtcct
atccatgcactggctttctctcccaatgggaagttcttagcttctggagccactgatgga
agagttcttctctgggacatcggccatggactgatgtttgccgagctcaaaggccacaca
gataccgtctactccctcaagttcagtagggatggcgagatccttgcctctggttctatg
gacaacacggttcgcctgtgggacgcattgaaagcatttgatgatttagagactgatgac
ttcactgcaaccacgggacacattcatctacaagaaaactcgcaggagcttctgctgggc
acctacatcactaaatcttcacctgtcatacaccttcacttcacccgcaggaacctgctg
ttggctgctggagcctacaatccatga
DBGET
integrated database retrieval system
