Paralichthys olivaceus (Japanese flounder): 109627577
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Entry
109627577 CDS
T06037
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
109627577 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pov04121
]
109627577 (slx4)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109627577 (slx4)
Ubiquitin system [BR:
pov04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
109627577 (slx4)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
109627577 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BTB
Slx4
zf-met
zf-C2H2
zf-C2H2_jaz
zf-C2HC_2
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
109627577
NCBI-ProteinID:
XP_019939746
LinkDB
All DBs
Position
Unknown
AA seq
1774 aa
AA seq
DB search
MDDSDQDFVDLCSKVLKRVRKKPGEAKPPRGAEHQSASSQASESDKRKRKNKKDGDSRSK
VTGTQSVCTGTGCDSGDAGSLDFPSGARAERVLTAKDKVLLRMQQFTRTSPQRMVHRDAS
QPTNHENSHTPNPQAQGQDPPEPCTSGLHPDSDEAIALRLQQELDKEAAEAEVLDLEDGG
LFFCQICHRDLSHMTPEGRTQHTNRCLDDSEESTPHPPPPPAVPECPICGKKFNSQKSRS
AHLKRCSSDMGVAPAVLLQALHRQAEETQNVPTVIPARTQPGGTKRKGHSKSGVPARKKP
RKKTDPLDEDTMVALALSSSLLEQERGAQRELKTEFSASLMPPVLKWQPDTGKGRRKKKK
GAVPRPPPLLLVQDAQAALVKLQERVSALLLHSRPPSPPTPTRCPSSLCGWSSAAPLWQK
STLLSSSFTCQSDFYTPELREFISPWETPKTAAAPLSAGNKSESSLRPLTEGTPVAGTRT
STLPSSSQTAASSSAHSTPGTGQLPVGSQTLRDLMELAEDGMTLTQCEYMTSGTDKNEQN
RARLSTNLRLSGFVLEEAEEQADLCVSGFLPETAHTRSENTHRRAQRTSDHPRGDEERGH
QSVALSRLTSDLSSMVNNPQLSDVQIQVDSGDIYFAHSFMVYARCPLLAEMVHESGFGVQ
EEGSSAAQRVLMNDVPGQAVFALLQYLYTAHCSIPASLRPHILELASRFDLQELHHLCES
PTPGQEADYTNQSENNDQTDQAFMVLLRSMWNEEDEEDEGLDTDVGDDEERRLEEDHQTD
DVASGERGICEDQVNEEELEEIYEFAATQRKREEEENKEEDDEEEEKVDDGEEALTEVKR
ELSKKTTKPNSQLEPDPSLDPTYSRLFSDTWGVYEDEDPSSTSPSTSSLLKTTTSQYQQH
QSSHKPSCELSGITLLQSSPSGFDDFSQSPQPTTSNLPVTGLSPGQAGDSGTDAVELDVS
KECLSLKRESQGSRSICVPVSPDPPPKKKEPELIVLSDSSEEMEVDVAVLRPCSPLSHSP
CIVRNLQSYTQIKPQSIPKPIQPLMENKVSHSLKLNAGDPSAASDICHPGSGCDPSPDCS
PEVSWLIPSTPVQHERCGRTSSSRSSSTQSKSSICRTQLFPKGDSSSSRSSLFSSPALPL
HNRLHNSSRVSAHVGPTEGSVPRLKLKETAPCSSSLDLTFSPQRTSSDDGNKNREVSAVL
PHKIKSALLSSSSHRHPFQSSSKQETLQHVQRQPYSSTPLHTELQQPPVLLAASPLNSSL
DKQRSTSQGSNRASSESPEKTELGSFHLSPLSSPSSSHRGLHNSQKHKSSSESQRSVESS
SHESTGAELKRGGIRNEGAERESKCKNKDSRVEGQQEEAKEESEEAEIAESSLQQSFMDE
PPIAFNDSWGLDACVEANPGCFSLRLEDSGGYSRQERSPGRKETTSVECHRPPSTRCIQS
LSSCSDLENSSPSKAQSAQPTTSALAHRNASFTPSPPEQSNSFLNPQIWDSWQEEQEEAL
PLSQRVNPSAQLRTPASSHNRKRCSVVPVTPMPHYSDMDTPDLKNKLNRFGVRPLPKRQM
ILKLKEIHQYTHQLVSSDSEDEAASAGRAAQRKPPPNTSSAGAGSQTVKFKEPRAPAPIS
PLKQRREEEEEELLSASQSSNTSSTAASEESERSNPELCLTSDSDSDGGISASQAATRLQ
DRLQAVRFFILSDSGLYSQILQYQPLVLSQLQLRLKEAGIRLGAAKLMDYLDSQCITFTT
AKPGHSAPSRRRGKRTKAAGVRGTGRKKTAPISL
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgaccaggattttgtagatctctgttccaaggtgctgaaacgtgtacgc
aagaaaccaggtgaggccaagccaccacggggagcagagcatcagtcagcctccagccag
gcaagcgagagtgacaagaggaagagaaaaaacaaaaaggatggtgactctcggtcaaaa
gtcacggggacccagtctgtctgcactggaactggctgtgattcaggagatgctgggtct
ttggatttcccttcaggagctagagctgagagagtcctgacagcgaaagacaaagtgctt
ctcaggatgcaacagttcacgagaaccagtcctcagaggatggtgcacagggacgcgagc
cagccaacaaaccacgagaacagccacactccgaatccacaggcacaaggacaagatcct
ccagaaccctgcacttctggtctccacccagacagtgacgaggcgatagccctgcggctg
cagcaggagctggacaaggaggcagcagaggccgaggtgttggacctggaggatggaggc
ctcttcttctgccagatctgccacagagacttgtcacacatgaccccagaggggcgaacg
caacataccaacaggtgtttagatgacagtgaagagagcaccccgcaccctcctcctcct
cctgctgtccctgaatgtccaatctgtggtaagaagttcaactcccagaagagtcgctcg
gcccatctgaagcgctgctcctcagacatgggggtagctcctgctgttttgctgcaggct
ctgcatagacaggctgaggagacccagaacgtcccaactgtcatcccagcacgcacacag
cctggaggcactaaaaggaaaggccattccaagtcgggagtcccagcgaggaagaaaccc
aggaagaagaccgatcccctggatgaagacaccatggtggctctggctctgtcctcctcc
ctgctggaacaggagagaggggcacagagagagttaaaaacagagttctctgcctctctc
atgcctccagtgctgaaatggcaaccagacacaggtaaagggcgcagaaagaagaaaaaa
ggagccgtccctcgtcctcccccgctcctcctcgttcaggatgctcaggcggccctggtg
aagctgcaggagcgtgtttctgctctcctcctacacagccgccccccctctccccccacc
ccgacccgctgccccagcagcctgtgtggctggagcagtgctgcacctctctggcagaaa
agcacactgctgagcagcagcttcacctgtcagtctgatttctacaccccagagctcaga
gagttcatttcaccttgggaaaccccaaagactgctgcagcccctttgagcgcaggaaac
aagtcggagtcttctctccgacctctgactgaaggaactcctgtggcagggaccaggacc
tccaccctgccttcatcctcccagactgcagcctcctcctctgctcactccaccccgggc
acagggcagctcccggtgggcagccagacccttagggacctgatggagctggctgaagat
ggcatgaccctcacacagtgtgaatacatgacctcgggcactgacaaaaatgagcagaac
agagccaggctgtccacaaaccttcgtctcagcggttttgtcctcgaggaggcagaggag
caggctgacctatgtgtgagcggcttcctgccagagacggcacacacacgctcggagaac
acacacagacgagcacagaggacaagtgaccatccacgtggagatgaagagcgaggccac
caatcggtggcactatcgagactgacgtcagacctgagcagcatggtgaacaaccctcag
ctcagtgatgtgcagatccaggtcgacagtggagacatctactttgcccattccttcatg
gtgtacgctcgctgccccctgctggcagaaatggtacatgaaagtggttttggggtgcag
gaggagggttcgtctgcagcccagagggtgttgatgaacgacgtcccgggacaggccgtg
ttcgctctgctgcagtacctttacacggcccactgctccatcccagcctcactgcgacct
cacatactagagctggcatcaaggtttgacttgcaggagctgcaccatctttgtgagtca
ccgacacctggacaggaggcagactacacgaaccagagcgagaacaacgaccaaacagac
caggccttcatggtgctgctccgctctatgtggaatgaagaggatgaggaagatgaggga
ttggatactgatgttggagatgatgaggagagaaggttggaagaagatcatcaaaccgat
gatgtcgcatctggtgagcgaggaatctgtgaggaccaggtgaacgaggaagagctggag
gagatctacgagtttgcagcaacacagagaaagagggaggaggaggaaaacaaagaagag
gatgatgaagaggaggaaaaggtcgatgatggagaggaagcactgacagaagtgaagaga
gagttgagtaagaaaactacaaagccaaactctcaacttgagccagaccccagcctggat
cccacctacagccgcctcttctcagacacttggggagtctacgaggacgaagacccctct
tccacatccccttcaacctccagtctactaaagacaaccacctcgcaatatcagcaacac
cagtcctctcacaaaccctcatgcgaactctccggcataactttgctccagtcctcacca
agcggatttgatgacttttcccagagccctcaacctacgacgtccaacctccctgtcaca
ggtctgtccccgggtcaggcgggtgactcaggaacagatgctgttgaactggacgtttct
aaagaatgtctttctttgaagcgagaaagccaaggttctcgtagtatttgtgttcctgtt
tctcctgatccacctccgaagaagaaggagccagagctcatagttttgtccgactcaagc
gaggagatggaggtagatgttgctgttcttagaccctgcagtcctttgtcacattctcct
tgcattgtccgaaacctgcagagttacacgcaaatcaagcctcagtcaatcccaaaacct
attcaaccgctcatggagaataaagtgtcccacagtttaaagttaaatgcaggtgatcca
tctgcagcctcggatatatgtcatccaggttctggttgtgatccgagtccagactgttcc
cctgaggtctcctggctgatcccgtccacaccggtgcagcatgaaagatgcggcaggacc
agctcctccaggtccagctccacccagagcaaaagcagcatatgcaggacgcagctgttc
cctaaaggcgattcgtcttcttcacgctcttctctcttctcttcccctgccctaccactt
cacaacagacttcacaactcaagcagagtttctgcccacgttggcccaacagagggcagc
gttcccaggttgaaactgaaagagacagctccctgtagctccagcttggatctcacattt
tcccctcaaagaaccagtagtgatgacggaaataagaacagagaagtgtctgcagttctc
ccgcacaaaattaagtctgcactcctctcaagctcatctcaccgtcatcccttccaatct
tcctcaaagcaggaaacactccaacacgtccaacggcagccctacagcagcacccccctg
cacacagagctccagcagccccctgttcttcttgctgcctccccgctcaacagcagcctc
gacaagcagcggtcaacaagtcaagggagcaatagggcgtcatctgagagcccagagaag
acagaattagggagctttcatctctccccattgtcctccccctcttcatctcacagaggt
cttcataattcacagaaacacaagtcctccagtgagagccaacgttctgttgagtccagc
agtcatgagagcacaggggctgagctcaagagagggggaataagaaatgagggggcagaa
agagaaagcaagtgtaaaaataaagactcacgtgttgaaggacaacaggaggaggcaaaa
gaagaaagtgaggaggcagagattgccgagtctagtttgcagcagagcttcatggacgag
cctcccatagctttcaatgactcttggggccttgacgcctgcgtggaagccaacccaggc
tgcttcagtctgaggctggaggacagcgggggatacagccgacaggagcgtagcccggga
cgaaaagaaacaacctctgttgaatgtcatcgtccgccatcgactcgctgtatccagtca
ttgagcagctgcagcgatttggagaactcctctccatctaaagcccaaagtgcacaacca
accaccagtgcactggctcatagaaacgcttccttcaccccgtcaccaccagagcagagc
aacagcttcctgaacccacaaatatgggacagctggcaagaggaacaagaggaggccctt
cctctctctcagagggtgaacccttctgctcagctcagaacaccagcatcatcacacaat
agaaaacgctgctccgtggtgcccgtcactcccatgccccactactctgacatggacaca
ccggacctcaagaacaaactcaacaggttcggcgttcggcctttaccaaagcgccagatg
atcctcaaactgaaggagatccaccagtacacccaccagctggtcagttcagactccgag
gatgaggcagcctctgcggggcgtgctgctcagaggaagcccccccctaacaccagttca
gcgggtgctggcagccagacagtgaagttcaaagagcccagagcaccggctcccatctcc
cctctgaaacagagaagagaggaggaggaggaagagctgctctctgcctcacagagctcc
aacacctcttcaacagccgccagtgaagagtctgaaaggtccaatccagagctttgcctc
acttccgactcagacagtgacggtggcatctctgcctcccaggcggcgactcgacttcag
gatcgcctccaggccgtgcgtttcttcatcctgtcggactccgggctgtacagtcagatc
ctccagtaccagcctctggttctctcccagctccagctgcgactcaaggaggccgggatc
cgcctgggtgccgccaagctgatggactacctggactctcagtgcatcaccttcaccacg
gccaagccaggccactctgcacccagccgcagacggggaaagaggacgaaggcggcgggt
gtaagaggaacaggcaggaaaaaaactgctccaatttcactttaa
DBGET
integrated database retrieval system
