Paralichthys olivaceus (Japanese flounder): 109628540
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Entry
109628540 CDS
T06037
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03040
Spliceosome
pov04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109628540 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109628540 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pov03041
]
109628540 (prpf19)
04121 Ubiquitin system [BR:
pov04121
]
109628540 (prpf19)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109628540 (prpf19)
Enzymes [BR:
pov01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109628540 (prpf19)
Spliceosome [BR:
pov03041
]
Complex B
Other components
Prp19 complex
109628540 (prpf19)
Complex C
Prp19-CDC5 complex
109628540 (prpf19)
Ubiquitin system [BR:
pov04121
]
Ubiquitin ligases (E3)
U-box type E3
109628540 (prpf19)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
109628540 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
PROPPIN
U-box
Nup160
Cytochrom_D1
Ge1_WD40
zf-Nse
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
109628540
NCBI-ProteinID:
XP_019941218
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAVPTSQPTAAGVGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELVRAEDLSKYRQVATHAGLHSASVPGILALDLCPSDTNKVLT
GGADKNVVVFDKNEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDTTIRVWSVTGGNCV
QVVRAHEGGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT
GVAFGENAQFLTSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcaatctccaacgaggtgccggagcacccgtgtgtctcccccgtg
tccaaccaggtgttcgagcgccggctcatcgagaagtacatcgcggagaatgggacggac
ccgatgaatggacaaccgctgtctgaggagcagctcgtagatatcaaagtgtcccatcct
attagaccaaaggcgccatcagcaacaagcattccggccattctaaaatcccttcaagat
gagtgggatgccgttatgcttcacagcttcaccttgcggcagcagctgcagactactcgc
caagaactgtcacacgccctctaccaacacgatgccgcctgcagagtcatcgctcgcctc
accaaagaggtcactgctgcgagagaagctcttgccacactcaaaccccaagctggattg
gttgcccctcaggcagttcccacctctcagccgactgcagcaggtgttggtggagagcct
atggagattagtgaacaggtcggaatgaccccagagatcatccagaagctccaagacaaa
gctactatccttaccacagagagaaagaagagaggaaagactgtgccagaggagctggtt
agagctgaggacctcagcaaataccgccaagtggccactcatgccggtcttcatagtgcc
agtgtgcctggtattctggctttggatctgtgtccttcagacaccaacaaagtgctcact
ggtggagctgataagaacgtggtggtctttgacaagaatgaggagcagattgtggcgaca
cttaagggtcacacaaagaaggtcacctcggtcatctaccatccatcccagtctgtggtc
ttctctgcatcaccagacaccaccatccgtgtgtggtctgtcactggaggcaactgtgtc
caggtggttcgtgcccatgagggaggagtcactggactctccctacatgctactggagac
tacttgctcagctcctcagaggatcagtactgggccttctcagatattcagactggtaga
gtcctcaccaaagttactgatgaaagtgctggctgcgctctcacctgtgctcagttccac
cctgatggtctcatttttggcactggtacggctgactctcaaatcaagatttgggatctg
aaggagcgcaccaatgtggccaacttccccggccactctggtcctgtcacctccattgct
ttctctgagaatggatactatctggccacaggtgcccaggatagctctctgaaactgtgg
gatctgagaaaactgaagaacttcaagaccatcactcttgacaacaactacgaggtgaag
tcccttgtgttcgaccagagtggtacttacctggctgtaggagggtctgacatccgtgtc
tacatctgcaagcagtggtccgaggtcctcaacttcacagaccatacaggcttggtgact
ggagtggcctttggagagaacgctcagttcctgacctctgcgggaatggacagaagtctg
aaattctacagtttgtag
DBGET
integrated database retrieval system
