Paralichthys olivaceus (Japanese flounder): 109630220
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Entry
109630220 CDS
T06037
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109630220 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pov03041
]
109630220 (prpf8)
Spliceosome [BR:
pov03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109630220 (prpf8)
Complex C
U5 SnRNP specific factors
109630220 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109630220
NCBI-ProteinID:
XP_019943809
LinkDB
All DBs
Position
Unknown
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPPAMPPGVPPPVPVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDSEEDGSVVEWFYEHQPLKDTSKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLAFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaccttcccctacagaggggtccctccagcgatgccaccaggtgtaccccct
cctgtgccggtgccagactacatgtctgaggagaaactacaagagaaagcaagaaaatgg
cagcagttgcaggcaaagcgctactcagaaaagagaaaatttggatttgtcgatgctcag
aaggaagacatgccacctgagcatgtccgcaagatcatcagggaccatggagacatgacc
aatagaaagtttcgccatgacaagagggtctaccttggtgcactcaagtacatgccccat
gcagtcctgaaactgcttgagaacatgcccatgccttgggaacagatcagagatgtgcct
gttctctaccacatcactggagctatttcatttgtgaatgaaataccctgggtcatagag
ccggtgtacattgcccagtggggcaccatgtggatcatgatgcgtcgtgagaagcgcgat
cgccggcacttcaagcggatgcgtttcccaccatttgatgatgaggagccgccgctggac
tatgctgacaacatccttgatgtggagccactggaggccattcagatggagctggattct
gaggaggacggttcagttgttgagtggttctatgagcaccagcccctcaaagacacgtcc
aagtttgtgaatggcaccacctaccgtcgctggcagttcacactgcctatgatgtccacg
ttgtaccgtctggctaatcagctgctgacagatctggtggatttcaactacttttatctc
tttgacctcaaggcctttttcacttctaaggccctaaatatggccatccctgggggacca
aagtttgagccactggtgcgggatatcaacctccaagacgaagactggaatgagttcaat
gacatcaacaaaatcatcatccgacagcccatcaggacagagtacaaaatcgcttttccc
tatttgtacaacaacttgccacaccatgtccaccttacctggtatcacacaccaaatgtg
gtgtttatcaagacagaggatccagatctgccagcgttctactttgacccgctgatcaac
cccatttctcacagacattctgtcaagagtcaagagcctctgcctgatgatgatgaggaa
tttgagctacctgagtatgtggagcccttcctcaaagagaccccactctatacagacaac
acagctaatggcattgctctgctgtgggcgcccagacccttcaacctccgatctggccgc
acaagacgtgccattgacatccccctgattaagaactggtaccgtgagcattgtcctgca
ggacagccagtgaaagtgcgtgtatcataccagaaactgctcaagtactatgtgctcaat
gctctgaagcacagaccacccaaggcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttctttcagtccaccaagttggactgggtggaggtcggcctgcaggtttgc
agacagggttacaacatgctcaatctgctcatccaccgcaagaacctcaactacctgcat
ctcgactacaacttcaatctgaagcctgtcaaaacactgacaacaaaggagcgtaagaag
tccagattcggcaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtgcagtacagactgggaaatgttgatgctttccagttgtctgatgga
ctgcagtacatcttcgctcacgttggtcagctgacaggcatgtaccgctacaagtacaag
ttgatgagacagattcggatgtgcaaagacctgaagcatcttatctactaccggttcaac
actggtcctgtgggcaagggtccaggttgtggcttctgggctcccggctggagagtgtgg
ctgttcttcatgaggggcatcactccactgttggagaggtggctggggaatcttcttgcc
aggcagtttgaaggacgtcactcaaagggtgtggccaagacagtgaccaaacagcgtgtg
gagtctcactttgaccttgagctacgtgctgcagtgatgcatgacatcctggacatgatg
cccgagggtatcaaacagaacaaggctaggaccatccttcagcaccttagtgagtcctgg
aggtgctggaaggccaacatcccttggaaggtgccaggcctgcccactcccattgagaac
atgatcctgcgctacgtgaaggccaaagctgattggtggacaaacaccgcccactacaac
cgtgagcgaatccgtcgtggagccactgtggacaagacggtgtgtaagaagaacctaggc
agactgactcgtctgtacctgaaagctgagcaggagagacaacacaactacctgaaagat
ggaccctacatcacagctgaagaggcagtggccatttacaccactaccgttcactggctg
gagagtcggaggttctcacccatccccttccctcctctgtcctacaaacatgacaccaag
ctgctcatcctggcattagagaggctcaaagaagcatacagtgtgaagtctcgtctgaac
cagagtcagagggaggagctggggctgatagaacaggcctatgataatccccacgaggcc
ttgtccaggatcaaacgtcatctgctcacacagagagccttcaaagaggtgggtatcgag
ttcatggacttgtacagccacctggtgcctgtgtacgatgtggagcccctggagaagatc
acagatgcctacctggaccaatacttgtggtatgaggcagacaaaagacgcctgtttcca
ccctggatcaaacctgctgacactgaaccaccgccactgctcgtctacaagtggtgccaa
ggcatcaacaacttgcaggatgtgtgggagactgctgagggagagtgcaacgtgatgctg
gagtctcgttatgagaaaatgtatgagaagattgatttgacattgctcaataggctgtta
cgtcttattgttgaccacaacatcgctgattacatgacagccaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcctatggcatcatcagggggctccagttcgcc
tcgtttattgtacagtactatggcctggtgatggatctgctggtgctgggcttgcaccgt
gccagtgagatggctggtccacctcagatgccaaacgacttcctcagtttccaggacaca
gctacagaaagtgcccacccaatcaggctttactgtcgctacatcgaccgcatccacatc
ttcttcaggttctcggctgatgaggccagagatctgattcagaggtatctgacggagcat
ccagaccccaacaatgagaacatcgttggttacaacaacaagaagtgctggccccgtgat
gctcgcatgagactgatgaagcacgatgtcaatcttggacgtgcagtgttctgggacatc
aaaaatcgcctgcccaggtctgtgaccactatccaatgggaaaacagctttgtgtcagtc
tacagcaaagacaatcccaacctgctcttcaacatgtgtggatttgagtgtcgcatcctt
cccaagtgccgcaccagttacgaagagtttactcacaaggatggtgtgtggaacctgcag
aatgaggtaactaaagagaggacggctcaatgtttcctgcgtgtggatgatgaatcaatg
cagcgcttccacaacagagtgcgtcagatcctgatggcctctggatccaccacattcaca
aagattgtgaacaaatggaacacagctctgatcggcttgatgacatacttccgtgaggct
gtggtcaacacacaggagcttctagatctgctggtgaagtgtgagaacaagattcagaca
cgtatcaagatcggtctgaactccaaaatgcctagtcgctttcctccagtagtcttctac
actcccaaagagctgggtggccttggcatgctgtccatgggccatgtgctcatcccacag
tcagacctacggtggtccaagcagacagatgtgggcatcactcacttcagatctggaatg
agtcatgaagaggaccagctgattcctaacttgtatcgttacattcagccatgggagagt
gagttcatcgactcccagagggtctgggctgagtacgcactcaagagacaggaggccatc
gcccagaacaggcgcctgacccttgaggatttggaggactcatgggacagaggaatcccc
cgtatcaacacccttttccagaaggacagacacacactggcttatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtgctgaagcagaatccgttctggtggactcac
cagaggcatgatggcaaactgtggaacctgaacaactaccgaacagacatgatccaggct
ctgggcggtgtggagggcatcttggaacacacgctcttcaaaggcacttacttccccacg
tgggagggtctcttctgggagaaggccagtggctttgaggagtctatgaaatggaagaag
ctgaccaatgctcagaggtctggtctcaaccaaatccccaaccgtcgattcacactgtgg
tggtcacccaccatcaacagagccaatgtgtacgtgggtttccaggtgcaacttgacctg
actggaatcttcatgcacggaaagatccccacactgaagatctcactcattcagatcttc
agggctcacttgtggcagaagattcatgagagcattgtcatggatctctgtcaggtgttt
gaccaggaactggatgctctggagattgagacggtgcagaaggagaccattcaccctagg
aagtcatacaagatgaactcgtcttgtgcagacatcctactctttgcatcatacaagtgg
aatgtctctcgaccatctctgctcgctgactccaaagacgtgatggacagcaccaccacg
cagaagtactggattgacattcagctccgctggggtgactacgactcacatgacatcgag
cgctacgccagggctaagttcctggactacaccactgacaacatgagtatctacccctcc
cccactggggtgctgattgctatcgacctagcctacaaccttcacagtgcctatggtaac
tggttcccgggaagcaagcctcttatccagcaggccatggctaagatcatgaaggccaac
cctgccctgtatgtgctcagggagcgcatccgcaaaggtctgcagctgtactcttcagag
cccactgagccctacctgtcctcacagaactacggtgaactcttctccaaccagatcatc
tggtttgtggatgacaccaatgtctacagagtcaccatccacaagacatttgaaggtaac
ttgaccacaaagcctatcaacggagccattttcatcttcaaccccaggactggtcagctc
ttcctcaagatcattcacacatctgtgtgggctggacagaaacgtttgggacagttggcg
aaatggaagacagctgaagaagtggctgccctgattcgctccctccctgtagaagaacag
ccaaaacagatcattgtcaccaggaagggcatgctggaccctctggaggtccacttgctt
gacttccccaacattgtgatcaagggctctgagttgcagctgcctttccaggcctgtctg
aaggtggagaagtttggagacctgatcctgaaggctacagaacctcagatggtgctgttc
aacctctatgacgactggctcaagaccatctcatcttacacagccttctctcgactcatc
ctgattctcagagcgctccatgtcaacaacgaccgagcaaaggtgatcctcaagcctgac
aagacgacaattaccgagccccaccacatttggcccacactcactgatgaggagtggatc
aaggtagaggtgcaactcaaggaccttattctggcagattatggcaaaaagaacaatgtg
aacgtggcctcactgacgcagtctgagatccgtgacatcatcctgggtatggagatctct
gctccgtcacagcagcgccagcaaattgctgagatcgagaaacagaccaaagagcagtcg
cagctcaccgccacacagacccgcaccgtcaacaagcatggtgacgagatcatcacctcc
accacctccaactacgagacgcagaccttctcctccaagactgagtggagagtgagggct
atttctgctgctaacctccatctccgaaccaaccacatctatgtgtcgtctgatgacatc
aaggagacgggttacacctacatcctgcccaagaacgtcctcaagaagttcatctgtatc
tcagatctacgagcacagatcgcaggttacctgtacggcaccagcccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtaccacaatgggggacgcaccagactgtc
cacctgcccaaccagctgcctggtcatgaataccttaaagaaatggagcccctcggctgg
atccacacccagcccaatgagtcaccacagctgtcccctcaggacgtcaccactcacgct
aaggtcatggctgacaacccctcatgggatggagaaaagaccatcatcatcacctgcagc
ttcacccccggctcgtgcacactcacagcctacaagctaacgcccagtggctacgagtgg
ggtcgtcagaacacagacaagggaaacaaccctaaaggttacctgccctcccactatgag
agagtgcagatgctgctctctgatcgtttccttgccttcttcatggtgcctggacaagtc
tcctggaactacaacttcatgggcgtgcgccatgatcccaacatgaagtacgatctgcag
ctggccaaccccaaagagttctaccatgaagttcatcggccctcacacttcctcaacttc
gcctcactgcaggagggcgagatctacaacgctgaccgagaggacatgtatgcttga
DBGET
integrated database retrieval system
