Paralichthys olivaceus (Japanese flounder): 109631358
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Entry
109631358 CDS
T06037
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pov04147
]
109631358
00535 Proteoglycans [BR:
pov00535
]
109631358
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109631358
Exosome [BR:
pov04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109631358
Proteoglycans [BR:
pov00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109631358
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109631358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
109631358
NCBI-ProteinID:
XP_019945620
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
MPKMRTQAGVLFLLAQCVVYSDAWFWSWTGTTTLAPTMDEGSGSPAGSGEQPTEARVGAQ
IIDESHGIQVTGQAWIETTESAALTTLIPATPLENEQSSKKGTMGISSPLIKPEDTGVSL
MQLIGDPPPKEITRVFGPDNSSRYIFGLDANTGQLARAHLPSPFYRDFALRVNLKPTSDR
GGVIFSITDATQKIMYVGVKLSAVQGGNQNIILYYTEPDSQQSYEAARFLVPSMRDTWTR
FSIAVRDDKVLFYLNCDTDPRVMRIERSPDEMELDAGAGVFVGQAGGADPDKFLGVIEEL
RLVGDPRAAERLCEEDEDDSDMASGEGSGSDVPRPTRPSVEKHRWTTAPPSSGPIPEPPL
SKKETAATGTASGTQLISGLPGSPGPAGDRGEKGDRGDRGEKGDRGPIGAKGESGSGSSS
RGGARGEKGEPGEKGLKGSAGFGYQGKKGDSGPPGPPGPPGPPGAATELSVSSDGSVVSA
GPGPRGPAGPQGVPGSQGPPGADGEPGDPGEDGKTGPDGPPGFPGTPGDPGTKGEKGDRG
EGQPGPRGPPGLPGPPGSGVRSTFVDMEGSGFPDLESIRGLPGPPGAPGPPGPPGPATAG
TAMTSGAFGPPGKDGAPGQPGLPGLPGTDGLPGAAGPKGEKGDSAELGLPGVAGEKGARG
DPGLPGRAGESGLAGLPGPIGPVGQPGPPGPPGPSYRVGFDDMEGSGGGFSNGLPGIRGP
EGRQGPPGFPGLPGKPGLPGIPGQKGSEGATGRDGRPGLDGFQGPQGPKGETGDKGERGQ
SGRDGTGLPGPPGPPGPPGQVIYPSSGNFDGVVGSVGPQGGPGIPGQAGFPGPIGPKGDR
GDPGATGFGVKGEKGEPGLVIGPDGNLLSLDTLRGLKGDRGASGPVGPPGQYGPPGLKGE
IGMPGRPGRPGVNGYKGEKGDTAVGSGYSYPGVAGPPGPPGPPGPPGPPIPLDRFNRYDE
TSRNYQVKGEKGERGDRGVPGIPGTASNFDIYTFKNELKGETGDPGVKGEKGEPAGGYYD
PRFGGVQGSPGPPGKPGLPGPKGDSIIGPSGPQGPPGSPGIGYDGRPGPPGPPGPPGPTA
SLPGPYRPNHSVSVPGPPGPPGPPGNPGSSSGVTVLRSYDTMIASARRQAEGSLIYIIDK
SDLYLRVRDGVRQVMLGEYRPFFRDLENEVAEVQPPPVILYPQSQDQSHNNGAGHYSKSD
TAIRPIEPPPQPPVEPVYPPQYDPRFPDPRQTGQTDGRLATQNTGNRYPVTPQRRPSPPL
PQPAHVDASGLHIIALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYT
IVRRSDRDSLPILNLKDQVLFSSWESIFGDNASKMRENVPIYSFDGRDIIRDSAWPEKMV
WHGSSNKGHRQTDHYCETWRAGDHAVTGLASSLQSGHLLQQTSSSCSGSYIVLCIENAFI
SHSKK
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagatgaggacccaggcaggagttttgtttttgttggcccagtgtgtggtctac
tctgatgcttggttctggtcctggactggtaccacaacgttggccccaacaatggatgag
gggtctggcagtccagcaggtagtggagaacaaccaacagaggccagagttggagcacag
atcattgatgagagtcatggaatccaagtgactgggcaggcttggattgagaccactgaa
tctgcagcactgaccactttaatacctgctacaccactggagaatgagcagtcatcaaaa
aagggcacaatggggatttcatcacccttgatcaaacctgaagacacaggagtctcccta
atgcagctgattggggatcctcctcccaaggagatcacccgagtctttgggcccgacaac
agctccagatacatctttggccttgatgccaacacaggccagctggcacgcgcccacctc
ccaagcccattctacagagactttgccctcagggtcaacctgaagcccacctctgacagg
gggggagtcatcttctctatcacagatgccacgcagaagatcatgtatgtgggggttaaa
ctgtcagccgtacagggcggcaatcagaacatcatcctgtactacacagaacctgactcg
cagcagtcgtatgaagcagccaggttccttgtgccctccatgagggacacctggacccgt
ttctccatcgctgtgagggacgacaaggtattgttctacctcaactgtgacacagaccct
cgggtgatgcgcattgagaggtccccagatgagatggagctggacgccggtgctggggtg
ttcgtcgggcaagctggaggggctgatcctgacaagttcctgggggtgatcgaggagctg
aggctggtgggagacccccgcgctgctgagagactctgtgaagaggatgaggacgactcc
gatatggcttcaggggaaggaagtggcagtgacgtaccgagacccaccagaccaagtgtg
gagaaacacagatggacgactgctcctccgtcctctgggcccatccctgagccgccactt
agcaagaaagagactgctgctactgggacggcaagtggcacccagctcatttcaggactc
ccggggtcaccaggaccagctggggatagaggagagaaaggtgaccgcggggacagagga
gagaaaggagacaggggaccaattggggcgaagggagaatcaggctctggctccagctct
cggggtggagcccgcggagagaagggagaacctggagaaaagggattaaagggcagcgca
ggatttggctaccaaggaaagaagggggattccggcccccctgggccccccggcccccct
ggccctccaggagctgccactgagctttcagttagcagtgatggctcagttgtttcagca
ggacctggaccacgaggaccagctggacctcaaggtgtcccaggctcccagggaccacca
ggagctgatggagagccaggtgatcctggtgaggatggaaaaactggtcctgatggacct
ccaggcttcccaggaaccccaggtgaccctggaaccaaaggagaaaagggagaccgtgga
gagggtcaacctggcccgagggggcccccaggacttcccggtccccctggatcaggagtc
agatctacttttgtggacatggaaggttcaggtttccctgacctggaatctattcgggga
ctacctgggccaccaggtgcccctggtccccccgggcctcctggccctgctacagctggc
acagcaatgacttctggagcatttggtccaccaggaaaggatggggcacctggacaacct
ggtttgcctggtttaccgggtactgatggcctcccaggagctgctggtcccaagggagaa
aagggtgattcagccgagctgggtcttccaggagtagctggagagaagggagctcgagga
gaccctggtttaccaggacgtgcaggagagtctggactggctggtctgcctggacccatt
ggaccggtggggcagcccgggccccccggacctcctggaccaagttatcgtgttggattt
gatgacatggaaggctcaggaggaggtttctccaatggacttcctggtatcagaggacct
gaaggaagacagggtcctcctggttttcctggacttcctggtaaacctgggttgcctggt
ataccgggtcagaagggcagtgaaggtgctacaggacgagacgggcgacctgggttggat
ggcttccagggacctcagggaccaaagggtgaaactggggacaaaggcgagaggggtcaa
tcaggtcgagatggaaccggactcccaggtccaccaggcccacctggaccaccaggacaa
gtcatctacccttcgtctggaaactttgacggagtcgtcggcagtgttgggcctcagggt
ggacctggtatacctggtcaagctggattccctggccctattggaccaaagggtgacaga
ggcgacccaggagctactggcttcggggtgaagggagagaaaggtgagcccggcttggtg
atcggacctgatggaaatctcctgtctctagatacgttaagaggcctgaagggagacaga
ggagcttctggccctgttggacctcctggccagtacgggcctcctggattaaagggtgaa
attggaatgcctggaagacctggtcgcccaggtgtgaatgggtacaagggagagaaagga
gacacagcagtcggttctggctatagttaccctggagtcgctggacctccaggaccgccc
ggaccacctggaccccctgggccacccattcctctggaccgcttcaatcgatatgatgaa
acttcaaggaattaccaagttaaaggggaaaaaggagaacgtggtgacagaggagttcca
ggaatcccaggaacagcttctaattttgatatttacacattcaagaatgagctgaaggga
gagactggagatccaggcgtgaagggagaaaaaggagagcctgctggtggttactatgac
ccacgttttggaggagtgcagggctcaccagggcctcctggcaaaccgggcctaccgggt
cccaagggagattccataataggcccctctgggccccagggaccaccagggtcaccaggc
attggttacgatggacgtccaggtcctccaggaccacctggacctccagggcccacagcc
tcgctccctggaccatataggcccaatcactccgtcagtgtccctggaccccctggtcct
cctggcccacctggaaatcctggctcctcctctggtgtcacagttttgaggtcatacgac
acaatgattgcttcagccagacgccaggcagagggcagcctcatctacatcatcgacaaa
tcagacctgtatttaagagtacgagatggagtgcggcaagtcatgctcggagagtaccga
ccattcttcagagatctggagaacgaggtggcagaggtccagccaccgcctgtaatcctg
taccctcagtcccaggaccagtcccacaacaacggagctggccattactccaagagcgac
actgccatacgtcccattgagcctccaccgcaaccgcccgtagagcctgtatacccccca
cagtacgatcccaggttcccagaccctagacaaacgggtcagacagatggaagattagcc
acccagaacactgggaacagatacccagtcactccacagagacgaccaagcccgcctctt
ccacagcctgcccatgtggacgcatcaggactacacatcatcgccttgaacgcccctcag
actggtaacatgcgagggatccgcggggcagacttcctgtgcttccagcaggctcgtgct
gtgggcctgaagggaaccttcagagcgttcctgtcctccaagcttcaagacctctacacc
atcgtccgcaggtcggacagggacagcctccccatcttgaacctcaaggaccaagtgttg
ttcagcagttgggagtcaatctttggagacaatgcgagcaaaatgagggagaatgtacca
atctactcgttcgatggtagagatatcatcagggacagtgcatggcctgagaaaatggtc
tggcatggatcgagcaacaaaggccacaggcaaacagaccactactgtgaaacatggcga
gcaggcgaccacgctgttactggtctggcatcatcattacagagcggccacctcctgcag
caaacctccagcagctgctccggctcttatatcgtcctctgcattgagaacgccttcata
tcacactccaaaaaataa
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