Paralichthys olivaceus (Japanese flounder): 109631596
Help
Entry
109631596 CDS
T06037
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109631596
NCBI-ProteinID:
XP_019946001
LinkDB
All DBs
Position
Unknown
AA seq
1609 aa
AA seq
DB search
MELRLGFRITLVFVILALTLSREGVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANLVESFDVAPDKTRVAVVRYSDRPTTEFNLERHRTLEDVKRAARNIRYLGGNTMTGDA
ISYTTTDIFTERNGARPAARGFQRVAILLTDGRSQDYVLEPSKAAAKAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTSY
GLEEVPGFDLMEFFNVRDILGTRVDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAYVTT
FKFRKTSRREDWYLWQVFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKKPEVDN
LFDRNWHKIALSVEAKAVSLYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELETCCDLPNGPCPKKVVTEAPPLEIPTPTPTVVEQRRGPQVNCSCST
GEKGEIGAPGVAGPMGEKGDTGPVGATGPMGLRGEKGETGRVISVKGERGEKGDTGRIGL
TGAPGQKGEKGLGGVPGIDGLSGDKGDKGESGQAGAPGLPGPAGLKGGKREHHSGIQGEK
GTPGSAGLAGVDGLPGKPGFPGKNGLRGLAGVPGPSGVKGNKGERGLPGLPGDVFQKDGL
QGEKGDAGPPGPPGAEGPPGPIGPPGVQGMPGEPGEFGQRGKKGENGLPGVDGLPGPPGP
QGPSGPPGNQGHTGPPGLPGEIGFSGKPGESGKPGLPGKDGLDGLQGNDGAVGPRGERGA
DGFPGKPGTKGDDGPPGPRGPSGERGEAGSPGQPGADGARGDRGVPGERGMDGPFGPKGE
KGDKGEVGTMGPPGAPGNVANVIPEPGEPGIPGEKGEKGDQGKPGEIGQRGLPGEQGFKG
PAGLAGPKGDTGPTGETGRVGDPGPPGIAGLQGPRGLPGSVGIPGIIGPPGPAGQRGDKG
EVGKPGQAGATGPPGEPGLTGPSGPPGKGKEGQNGDPGPQGIQGPPGQKGQPGSRGETGP
QGDRGSPGEGKVGPAGPIGNDGKPGPAGLRGLPGVAGPQGPAGHNGLPGRPGEKGSPGEP
GKAADLSDLNLKDVCSDCPAGPPGQPGLPGVLGDKGHPGLPGKNGQDGFQGPPGQVGPQG
PPGADGGKGIKGDRGPAGAAGDKGEKGHPGPPGHPGPPGSMGAAGNDGQPGTVGPPGPPG
EKGKEGLKGIQGPPGLPGMIGQPGKMGKDGRPGETGESGKQGEPGPQGNSGLRGLPGFKG
HRGEPGAPGPKGEDGKSGLPGHDGKPGKEGSRGSSGPEGLAGPRGESGKPGEPGPSGKSG
LPGAPGLRGDKGEAGNPGLPGFSGPKGPAGPAGPIGPEGKQGTPGRIGDRGLKGEKGDPG
VKGDKGHAGESGMPGNPGPPGRKGHTGMMGMSGPPGELGSTGPQGPSGNPGLPGPRGESV
SLEQMRRLIQEELAKQLDAKLAYLMAQIQPAHVKSTAGRPGPPGNPGKDGSTGRPGPPGE
PGMPGQNGGEGPRGPMGPKGEKGGRGEKGETGIGERGEHGLTGPVGPPGLPGYGKDGSPG
QAGSQGEPGNPGPHGQPGPPGPTGQCDPTQCAYYASLAQRPHTKNVKGT
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atggaattacgactgggatttcggatcaccttggtcttcgtcatccttgccttgactctg
tctcgtgagggagtggaagcacagagggcagggtgtaaaaatgtccactatgacctggcc
tttatcctggatacctcatccagtgttggaaaagagaactttgagaagatcagacaatgg
gtggccaacctggtggagtctttcgatgtggcaccagacaagacaagagtagctgtggtt
cgctacagtgacagacccaccactgagttcaacctggaaagacacaggaccctggaagat
gtgaagcgagctgcccgtaacatacgctacctggggggaaatacaatgactggggatgct
atcagctacaccaccaccgacatcttcacggagcggaacggagcgaggcccgcagccaga
ggcttccagcgggtggccatccttctcacggatggacgaagtcaggattatgttctggag
ccctccaaggcggctgccaaagccggcatcaggatgtttgccgtcggcatcggagaggca
ctaaaggaagagcttgaggaaatcgctgctgagccaaaaaatgcccatgtcttccatgtg
acggactttaatgccattgacaagatcaggggccggctgaggaggaggctgtgcgagaat
gtcctgtgtccaaacatgaaggttcaacctgatcgctttaagcccaacagcaccagttat
ggtcttgaagaggttccagggttcgacctgatggagttcttcaatgtgagagatatcctg
ggaaccagagttgatgaaggccagagttcttatgttcgccttggcaccatgcctattgta
cagcaaacagaagacgtgtttcctcaagggttaccggatgaatacgcctatgtgacgaca
ttcaaatttaggaaaacctcaagacgtgaagattggtacctctggcaggtttttgacaaa
tatggaatcccacaggtgtccatccgtctggacggcgagaacaaggcggtggagtacaac
gctgtcgggctgacaaaagatgctgtcagagctgtgttcaagaagcctgaagttgacaac
ctgttcgatcgaaactggcacaagattgccctcagtgtagaggccaaggctgtgtctcta
tacctggactgcaaacacatccagactctgcccatcgaagacagagaggacattgatatc
cagggaaagacagtgatcggaaagaggctgtatgacagtgtgccaattgatttcgacctc
caaaggatgatgatctattgtgattccaagcacgcagagcttgaaacctgctgtgatcta
cccaatggaccttgccctaagaaagtggtgacagaggctccccctttggagatccccact
ccgaccccgactgttgtggagcaaagaagaggccctcaagtcaactgctcatgttctaca
ggagagaagggagagatcggtgcacctggtgttgcaggtcccatgggtgaaaagggtgac
actggccctgtgggcgcgactggaccgatgggcctcagaggagaaaaaggagaaactggc
agagtaatctctgtcaagggtgagagaggtgagaagggtgatacaggcaggatagggttg
acaggtgctcctggacaaaaaggagagaagggacttggtggtgtgccaggtattgatggc
ttatctggagacaaaggagataaaggggaatcaggacaggctggtgcgccagggttgcca
ggtccagctggactaaaggggggaaaaagagaacatcattctggcatacaaggtgaaaag
ggaactccaggctccgcgggtctggcaggtgtggatggattaccaggaaaacctggcttt
cctgggaaaaacggtttgagaggactggctggtgtgcccgggcccagcggagttaaagga
aacaagggggagcgaggccttcctggattacctggggatgtgtttcaaaaagatggttta
cagggtgaaaagggagatgctggacctcctgggcctccaggggctgagggccccccagga
cctattggtcctccaggtgtgcaaggtatgcccggggaacctggagagtttggccaaagg
ggcaagaagggtgaaaatggattacctggagttgatggcctccctggacctcctggtcct
cagggtccatctgggccaccaggaaaccaaggacatactggacctcctggtcttcctggt
gaaattggattttcaggcaaacctggggagtctgggaagcctggtcttcctggtaaagat
ggacttgacggtcttcagggaaatgatggtgctgtggggcccaggggagagcgtggagca
gatggttttcctggaaagcctggaactaagggggatgatggcccacctggaccaagagga
ccttcaggggagagaggagaagctggttcccctggacaaccaggtgctgatggagcaaga
ggagataggggcgttccgggagaaagaggaatggatggaccgtttgggccaaaaggtgaa
aagggagacaagggtgaagttggaacgatgggaccacccggcgctccaggaaatgtggca
aatgtcatccctgagcctggtgaacctggaatacctggagaaaagggcgagaaaggagat
caaggcaaaccaggagaaatcggccaacgaggattacctggtgaacaaggtttcaaggga
ccagctggactggcgggtccaaaaggcgacactggtcctacaggagagacgggacgtgtt
ggagaccccggtccacctggcatagctggtcttcaaggtcctcgtggattaccagggagc
gtgggcatacctgggatcattgggcctcctggtccagctggacagaggggagacaagggt
gaagtgggtaaaccaggacaagcaggcgccacaggcccacctggagagcctggtttgact
ggaccttctggaccaccagggaagggcaaagaagggcaaaatggagatccaggaccacag
ggaattcaaggacccccagggcaaaagggtcaaccagggtcccgaggagaaacagggcca
caaggggacaggggctccccaggagaaggcaaagttggaccagcggggccaataggaaat
gatggcaagcctggacctgcaggcttgaggggtctacctggagttgctggtcctcagggt
ccagcaggacataacggtttaccaggaaggccaggagagaagggatcacccggagagcct
ggaaaggcagcagacctctctgacctaaatctgaaggatgtctgctcagactgccctgca
ggtccacccggacaacctggtcttccaggagtcctcggagataaaggacacccgggtctt
ccagggaaaaatggtcaagacggtttccaaggcccaccggggcaagtgggacctcaagga
ccccctggagctgatggaggaaagggtataaaaggtgatcgaggacctgctggagcagct
ggagacaaaggagaaaagggtcacccaggaccccctggtcatccaggtcctcctggctcg
atgggggcagcgggtaacgatggacagccaggcaccgtcggtcccccagggccccctgga
gaaaagggtaaagagggtctcaaaggaatccagggaccaccaggccttcctggcatgata
ggtcagcctgggaaaatgggaaaggatggcagaccaggtgaaacaggagaatctggcaag
cagggtgaacctgggccacaaggaaactctgggctcaggggactcccgggctttaaaggc
cacagaggagaacctggagctccaggacctaagggagaagatggaaagtctggattacct
gggcatgacggcaaacctggaaaggagggctccaggggatcatcaggtccagaaggactt
gctggaccaagaggagagtcgggcaagccaggggaaccaggaccatcaggaaaatcaggt
ctcccaggagctccaggtctcaggggagacaagggagaggccggcaacccaggattacca
ggatttagcggacccaagggccctgcgggtccagctggtccgattggcccagagggaaag
caggggacgccaggcagaattggtgatcgtgggctcaaaggtgaaaagggcgacccaggt
gtgaagggagataaaggacatgcaggagaatcaggtatgcctggaaaccctggaccccca
ggcagaaagggccacacaggaatgatgggcatgtcaggaccaccgggagaactcgggtct
actgggccacaaggaccttcaggaaaccctggtcttccaggcccaaggggagagtctgtg
tcactggagcagatgagacggctcatccaggaagagctggcgaaacaattagatgccaaa
ctggcttacctcatggctcagatccaaccagcccatgtaaagagtactgcaggccgtcct
ggacctccgggcaatccaggtaaagatggcagcaccggccgacctggcccccctggagag
cctggtatgcctggacagaatggaggagaaggacccagaggacccatgggccctaaaggt
gagaaaggaggaagaggagagaaaggagaaactggtattggtgaaagaggagagcatggc
cttactggcccagtcggtccccctggcctacctggctacggtaaagatggaagcccagga
caagctgggtcccaaggagagcctggaaaccccggcccccacggtcagcctggaccccca
ggtcctactggccaatgtgatcccacccagtgtgcctattacgccagcctggcacaaaga
ccccacaccaaaaacgtcaaggggacttaa
DBGET
integrated database retrieval system
