Paralichthys olivaceus (Japanese flounder): 109632657
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Entry
109632657 CDS
T06037
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109632657 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pov03400
]
109632657 (msh6)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109632657 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
109632657
NCBI-ProteinID:
XP_019947625
LinkDB
All DBs
Position
Unknown
AA seq
1379 aa
AA seq
DB search
MAKQSSLFNFFAKSPPPVSKPKTSPSPAEADLPSSVEKSSSSPKEQAKQQQQGKGNKVKP
KTESKSVKGGFKKLFGDKAAAAKESSSTCSFSAGALVWAKLEGHPWWPCMVVPQPLTGQQ
MRGRGRAQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPVIQHAMELA
DGVMCKSPEKRIQIPLCTDPSEDEDEYEEEMEVDKSTLTDEELSAEDDQKHEDVKSSKVS
RRSSRVSTEKSNKAKRRRIVVASDSDDSGDEFKPEHAASSSEDEEEEGTVSSEEEGEESM
HESEVESPIKPVKRKRPEEKSASAKPKVAPTPSAGPKRAPAAVAADTKSRLSAFSAPDSF
ESQANNSGSSGGATVWDHDKLEWLQDGRRKDRQRLRQSEDDYDPTTLYVPEDFLNRNTPG
MRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGNWAHSGFPEIGFARF
SDVLVQKGYKVARVEQTETPDMMEARCKTMFKPTKFDRVVRREVCRIITRGTQTYSVLDG
APSESQSKFLLSLKEKAEEDSSGQCRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIAH
FAPVEVLFERGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFKDTTG
KKQEAGSHFLPPLLKKMTSESDSLCLTPKEGHELALSALGGCIFYLKKCLVDMELLSMAN
FEEYVPVDVEMEKASGPASFFAQTRQKMVLDGVTLANLEIFQNAAGGTEGTLLERLDTCA
TPFGKRLLKQWLCAPLCNPTSVRDRLDAVEDLMGAQAQATEVSDLLKKLPDLERLLSKIH
SIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISILSPMTGEFRSSL
LRQIVSLKSENDGLFPNLSAELHRWETAFDHQKARATGVISPKLGFDPEYDQALIGVKNC
ERELQDYLDRQKKRLGCKNMAYWGTGKNRYQMEVPDSLSDRNIPEEYEVKSTKKGWKRYV
TQETEQLFSELQGFEEKRDAALKDCMRRLFYNFDKDYREWKTGVECMAVLDVLLALSRYS
QDGDGPMTRPQVVLPEGNNQVAPFVDLVGSRHPCVTKTFFGDDFIPNDIFIGCSGSDETD
EERSQALCILVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLGASD
HIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKICC
RTLFSTHYHSLVEDYTNNPAVRLGHMACMVENECEDPSQETITFLYKFIGGACPKSYGFN
AARLANLPEEVIQSGHRKAREFEKGTLSLRLFKKLCQFAEDTTRGDTHFPLLVQMLNNL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacaaagctctctgttcaatttcttcgccaagtctccgccgccggtctccaag
ccgaagaccagtccctctccggccgaggcggacctgccctcctcggtggagaagtccagc
tcgtctccgaaagaacaagcgaaacaacaacaacaaggcaagggcaacaaagtcaaaccg
aagactgagtccaagtctgtaaaaggtggattcaagaaactgttcggagacaaggccgct
gcagctaaagaaagcagctccacatgctcgtttagtgctggtgccctcgtgtgggcaaaa
ttagagggacacccttggtggccatgcatggtggtaccccaacctctgactggacagcag
atgagaggccgcggtcgagcgcaacgcattcacgtccacttcttcgatgaacctcccacc
agaggatgggtcagcaccaaatacatccgagagtatcaaggctctgacagcagtgacgct
aaaaccgggggggtgttcttcagcggcaagcctgtgatccagcatgcgatggaacttgct
gatggagtcatgtgcaagagccctgaaaaaagaatacagattccactctgcacagaccca
tctgaagatgaagatgagtatgaagaagaaatggaggtggacaaatcaactttgactgat
gaagagctcagtgctgaggatgaccagaaacacgaggacgtgaaatcatccaaagtcagt
cgccgttcatctcgggtttcaacagagaagagcaacaaggccaagcgacgtcgcattgtt
gttgcctcagacagtgacgactcgggtgatgaattcaaaccagaacatgctgcgtccagc
agtgaggatgaagaggaagaaggaacagtgagtagtgaagaggagggagaggagagcatg
catgagtccgaggtagaaagccccatcaagcctgtgaagcgcaaacgtcctgaagaaaag
tcggcaagtgcaaaacccaaagtggcacctaccccatctgctgggcctaagcgagctcca
gcagctgtcgcagccgacacaaagtcgcgcttgtctgctttctctgcccctgacagcttt
gaaagccaagcaaataattcaggtagcagtggaggagcaacagtttgggaccatgacaaa
ctggagtggttgcaggacggccggaggaaagacaggcaaaggctgcgtcagtctgaggat
gactacgatcctacaaccctgtatgtacctgaagactttctgaacagaaacactccgggt
atgcgtcggtggtggcagctcaaatctgagatgtttgatacagtcatcttctacaaggtg
ggcaagttttatgagctctaccacatggatgctgtgattggagtcaacgagttgggactg
accttcatgaagggcaactgggcgcactcgggttttccagagatcggctttgcccgtttc
tcagacgtattggtccagaaaggctacaaggtggctcgagtggagcagacagagaccccg
gatatgatggaagctcgctgtaagaccatgtttaaacccacaaaatttgaccgtgtggtg
agaagagaggtgtgccggattatcactcgcggaacccaaacctacagtgtgttggacggt
gcaccctcagagagtcagagcaagttcctgctgagtttaaaggagaaggcagaagaggac
agctccggtcaatgtcgcacctatggagtctgctttgtagacacctctgtgggttatttc
cacgtgggtcagttcccagacgatcgtcactgctcacgcctgcgcaccctgatagcacac
tttgcaccagttgaggtgctctttgaacgggggaacccatctgttgaaacacgcaaaata
ctgaaggcctctctgtcctctgctctgcaggaagggcttaacgcaggaacccagttctgg
gatgcacagaagactcttaaaaccctctcagaggaagactacttcaaagataccacaggg
aagaagcaggaggctggaagccattttcttcctcctcttttaaagaagatgacctctgag
agtgattcactgtgcctcactcctaaagagggccacgagctggctctgtcagcactgggt
ggatgcattttctaccttaagaaatgtctggtagatatggagctgctctccatggccaac
tttgaagaatacgtccctgtagatgttgagatggagaaagcttctggacccgccagtttc
tttgcccagactcgtcagaaaatggtactcgatggagtgacgctggcaaacttggaaatc
ttccagaatgcagcaggaggaaccgaggggacgttactggaacgtttggacacatgcgct
accccatttggcaagaggctgctgaagcaatggctctgtgctccgctgtgtaaccccaca
tccgtgagggacagactggatgctgttgaggacctgatgggagctcaggcccaggctact
gaggtttcagacctgctgaagaaactcccagacctggagcgtctcctgagtaaaatccac
agcattggaactcctctgaagggccaggatcaccctgacagccgtgcggttctctatgag
gaggtcacctacagcaaacgcaagatagcagactttctctctgcactggaaggtttcaaa
actatgcaggaaattatttctatcctttctcccatgacaggtgaatttcgctcctcattg
ctccgtcaaattgtcagtctgaaaagtgagaacgatggcctctttcccaacctctctgcc
gaactccatcgctgggagacagcttttgaccaccagaaagcccgcgccaccggtgtcata
agcccaaaacttggctttgaccctgagtacgaccaggctctgataggggtcaagaactgt
gaacgggagctgcaggattacctggacagacagaagaagaggcttggctgtaaaaacatg
gcctactggggaacaggaaagaaccgctaccagatggaggtgcccgacagcctctcagat
cggaacattccggaagagtatgaggtgaagtctacaaagaaaggctggaagcgttacgtg
acacaggagactgagcagctgttttcagagctgcaaggatttgaggagaagagagacgct
gccctgaaagactgcatgaggaggctcttctacaactttgacaaggactacagagaatgg
aagactggtgtcgagtgcatggcagtgcttgacgtactgctggccctgtcacgctacagt
caggatggagacggaccaatgaccaggccacaggtggtgctacctgagggtaacaaccag
gtagctccttttgtcgacctcgtcggatcgcgccacccttgtgtcaccaagaccttcttt
ggtgatgacttcattccaaatgacatcttcatcggctgctccggcagcgacgaaactgac
gaggagagaagtcaggcgttgtgtatcctcgtcacgggaccaaacatgggtggaaagtcc
acactcatgagacagtgtgggcttgtgatcatcctggctcagctgggttgctacgttcct
gctgagagcctgcgcttcacaccagttgacagagtcttcacccgactgggagcctctgat
cacattatggctggagagagcaccttctttgtggagttgagtgagactgccagcatcctg
caccatgccaccaagcattcacttgtgctcctggatgaattaggaaggggcacagccaca
tatgatggcacagcgattgccagtgctgttgtgaaggaactcgctgagaagatctgctgt
cgcactctcttctccacacattaccactccctggtggaggattacaccaacaaccctgct
gtgcggttgggccacatggcatgcatggtggagaatgaatgtgaggatccaagtcaggaa
accatcacattcctctacaagttcatcggcggtgcttgtcccaagagttacggcttcaac
gccgctcgacttgcgaacctcccagaggaggtcatccagtcaggacacaggaaggccaga
gagtttgagaagggcaccctcagcctcagactgttcaagaagctctgccagttcgctgaa
gataccacaaggggggacacacactttcctttacttgttcagatgctcaacaatctgtag
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