Paralichthys olivaceus (Japanese flounder): 109633707
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Entry
109633707 CDS
T06037
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109633707
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109633707
NCBI-ProteinID:
XP_019949295
LinkDB
All DBs
Position
Unknown
AA seq
1842 aa
AA seq
DB search
MDELTRQMDFSGDLSGDLSGDLSGERVVTETITTTRRLTSLPPKGTGGSNHRNMSSSAGG
LGLEKNVLTQNSSGTYFSSSSVGVNTNSYSSSSGVYLGGDSSGGGDGGLGSFLDGDGYGS
GGGGGGGGGGGGGRAGKAGSGGSYLVSSVSKVRSSSSGGGRRAQTAGSSGGLSPGFRERT
IITSRSGGYDGSSSANSSPEFTRKDYGNYCSSGARGRSESRESEIRARLQSASPTAGRWT
ELDDVKKLLKGRSSSVSPTRSSSASTTLPLPKKVSAEAKTVSVATQSVSSAFGSGVRTGA
FNTIDASGLYNTSLPSGQFDSGVKSGQYDVTLISSQYDTGVKSGQFDSAVKSGHYDVTVK
SGQYDTGVKSGQYDTGVKSGQYDTGVKSVQYDSMRSGQYDTGVKLGQYETSVRSGQYGGS
MRSGEYDTLDTVLPSFSWSTSTLPSPSAMVVTGNTSSHSYQVGTNNRSGGVSPLSPTSPS
SLSVYGFQNNLAPTTGTVLTTSGANVSANVGGYGVQKNVSTATGVVSSGVSSVTRTQIDD
TYKNKYLISEKENVSAKRDTERLILAKDSGKQFTSSSSVHVGGGSLSGDSIKKEKLISSY
SETAPLKSETGNTYYGSSGVVMKDKATYAEIHRDDGNFGGGGFCCCSDACCSWWKWLLGL
LLLSLLLLGLLFGLIALAEDVRKLKNRVATLEAESSVSARTSRLSGSSDSNNNLLVVGGG
GAGGGGDGTDSTVYLDAGGRGSGSKTRIGIAAGAAGSTGGGGNDISINGEGYGGAGSAGA
GSAGAASAGAGSDSSSTSGARVASGTGSVSGARVAGGGSAGGAGTSFSGTSGSTGTSFSG
FGTGVSGGHVDAASFQAMIQQMLRAEMQSQTFRAFLVSSAQGERGLPGPKGDAGYPGTPG
PPGMLGHAGPEGPKGQKGSSGEHGLEGQPGVRGRDGLTGSRGEPGPPGFGMKGDKGAPGD
AGVGSAGPKGAPGSPGEPGAQGFRGEAGPPGPKGDRGLPGFQGLKGETGEKGVRGMQGDP
GISGMHGPAGEKGSKGSMGLSGQDGAKGSRGDQGPAGPPGLRGPAGPPGDAGLPGGPGLQ
GPPGIPGNPGHPGAKGETGQAGRIINAAGSTSVGIPGPPGPAGPPGPAGSPGLSGPIGPA
GQPGQPGPKGDRGYKGDQGEQGITARRTESLSSTRAESHYGESGTLRFSSLPGPPGPPGP
PGRPGDSRQGPPGPPGPPGPTGYGRPGPKGDRGESGFSSSSGTYYTGPPGPPGLPGPKGS
TGSQGPRGYQGETGQPGAPGRPGSSERVSTYAAGSGISGPPGPPGPPGHPGPQGIKGDTG
APGIPGASRGSISVTSGPPGPPGPPGPPGQTGSFSSSSEMRQYITEYLSRSRQSSIPGPP
GPPGPPGVPGTFSGSMEDISTRIIAYIQRSGSGLSIGVQGPPGPPGPPGPGSRGLSVGEL
IIMLQRDDVRRYLSGPPGPQGPPGPQGPSGGLSGSYSAEQVAMYVFNIMNDRGIARGPPG
PPGLPGPPGSSSGGVSGFSTVTIDYSALMKNSEFRSWINSAVQQGPPGPPGVPGLTGPPG
PQGPPGVSTATVLGAGARGYSMEDIQRHLQGSGFRGLPGPPGPPGPQGPPGSYSGSVSYS
GNLPRESIRAEVQEYLTSDNVRRYITGPPGPTGPPGPRGPQGQRGEPGYSQSYVQSQSYS
QGDARLRSDQRDISKLSETLDYSNVALKVTDYIRNQGLLQEYLVEGPSRTNVRAIQGPPG
PPGPPGPVGYSRVIGSYGNVTADLMEFFRAYGTIPGPPGSIGPKGDRGYPGPRGEKGDPG
QPGLPGLPGAYTIQIPHKVQKRDTVNKMLRRRQLRPPAATGG
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaagacagatggacttctcaggagacttgtcaggagacttgtccgga
gacttgtctggagaaagggttgtgacagaaactataaccaccactaggagactgacttcc
ctccctccaaagggaaccggcggatcaaatcacaggaatatgtccagcagtgctggaggg
ctgggcttggagaagaatgtcttaacccagaacagcagtggaacttatttctcctcatcc
tctgtcggtgtgaacaccaacagctacagctcctcctcaggagtttacctggggggagac
tcctcagggggaggcgatggaggactggggagtttcttggatggagatgggtacggaagc
ggaggaggaggaggaggtggaggaggaggaggaggaggaagagcaggaaaagcaggaagc
gggggcagttatctcgtgagttcggtgtcaaaggtcaggtccagctcgtcaggcggtggc
aggagagcacagaccgctggctcgtcaggaggcctgtcgccaggtttccgagagaggacg
attataaccagccgctcaggaggttatgacggaagttccagtgcaaattcctccccagaa
tttactcgtaaagattatggaaactactgctccagcggtgcaagagggaggagcgaaagc
agagagagcgagatcagagccagattacaaagtgcctctcccaccgccggcagatggacg
gagctggacgacgtgaagaagctgctgaagggacgctccagcagcgtcagccccactcgc
tcgtccagcgcctccaccaccctgcctctccctaagaaggtcagcgcggaagccaagacc
gtctctgtggccacgcagtcggtgtcttctgcatttggctctggtgtgagaaccggtgca
ttcaacaccattgatgcttcaggcctgtataataccagtctgccatctgggcagtttgat
tctggcgtaaaatcaggccagtacgatgtcactctgatatcaagccaatatgacactggt
gtgaaatcaggacagtttgattctgctgtaaaatctggccattatgatgtcactgtgaaa
tcagggcagtatgacactggtgtgaaatcagggcagtatgacactggtgtgaaatcaggg
cagtatgacactggtgtgaaatcagtccagtatgattccatgaggtcaggacagtatgat
actggtgtaaaactgggccagtatgaaaccagtgtgagatcaggtcagtacggcggcagc
atgagatcaggtgaatatgacacgctggacaccgtacttccatctttctcctggtccacc
tccacgctgccctccccctccgccatggtggtcaccggcaacaccagcagccactcgtac
caggtcggcaccaacaacaggtctggaggagtctcaccgctcagccccacctcgccctcg
tccctgtcagtttacggctttcagaataatctggcgcccaccaccggcaccgtgctcacc
accagtggagccaacgtcagcgccaacgttggaggttatggcgttcagaaaaatgtgtca
actgcgaccggtgtcgtcagctctggagtctcttcagtcactcgaactcaaattgatgat
acgtataagaacaagtacttgatctctgagaaagagaacgtttcagctaagagggacaca
gagaggctcattctggctaaagacagcgggaagcagttcaccagcagcagcagcgttcat
gtaggaggagggtcactatcgggagattcaataaagaaagagaagcttatttccagctac
agtgagacggctccactgaagtctgagacaggcaacacttactatggatcctctggagtt
gtgatgaaagacaaagccacctatgcagagatccacagggacgacggcaacttcggcggc
ggtggattctgctgctgctccgacgcttgttgctcgtggtggaagtggctgctgggcctt
ctcctcctctccctcctcctgctgggacttctcttcggcctcatcgcgttggctgaggac
gtgagaaagctgaagaatcgagtggctaccctggaggccgagtcgtccgtctcagcgcgt
accagtcggctgtcaggctcttctgattccaacaacaacttgcttgtggtcggtggaggt
ggagctggaggaggtggtgacggcactgacagcacagtatacctggacgctggaggtaga
ggctcaggctccaaaacacgaattggaattgcagctggtgctgccggctccacaggtgga
ggtggaaatgatatcagtatcaacggggaaggctatggtggtgctggaagtgccggtgct
ggaagtgccggtgctgccagtgccggtgctggaagtgacagcagtagtaccagtggtgcc
cgtgttgccagtggtaccggtagtgtcagtggtgcccgtgttgctggtggtggcagcgct
ggaggtgccggcaccagcttcagcggcacctccggcagtacaggcaccagcttcagtggc
tttggtactggtgtgagtggaggacacgttgacgctgcctctttccaggcgatgattcag
cagatgctcagagctgaaatgcagtcacagacattcagagcgtttctggtatcttcagcg
cagggagagcgaggacttcctggacctaaaggtgatgctggttaccctggtactccaggt
cctccaggtatgttgggacatgccggcccagagggtcctaaaggacagaaaggaagctca
ggtgaacatgggctggaggggcaaccgggtgtcaggggtcgagacggcctgactggctcc
agaggtgagccaggtcctccaggctttggaatgaaaggtgacaaaggggctcctggagat
gctggggttgggtctgctggaccaaaaggtgcacccggatcaccaggtgaacctggtgct
cagggtttccgtggtgaggccgggccaccggggcctaaaggtgacagagggctccctgga
tttcaaggacttaaaggtgaaactggtgagaaaggtgtcagaggaatgcaaggtgaccca
ggtatatcaggaatgcatggtccagctggagagaaaggatccaaagggtcaatgggtctt
tctggacaagatggtgccaaaggatcaagaggtgaccaaggacctgccggcccccctgga
ctcaggggtcctgctgggcctcccggagacgccggtcttccaggaggacctgggcttcaa
ggaccaccaggaataccaggaaatccaggacatcctggagccaaaggtgaaactggtcaa
gcaggcagaatcatcaatgcagctggttccacttctgttggcatcccaggaccacctggg
cctgctggtcctcccggccctgcaggatctcctggattatcaggtccaatcggccctgct
ggtcagcctggccagcctggtcctaaaggtgacagaggatataagggagaccagggagaa
caaggaataacagcgagaaggaccgagagtttaagttcaaccagagctgagagtcattat
ggagaaagtggaaccttaagattttctagcctaccagggccaccaggtcctcctggccca
cctggacgtccaggagattcgagacagggacctccaggaccacctgggcctccaggtccg
acaggttatggaagaccaggacctaaaggagacagaggagagtcaggcttttcatccagt
tctggaacatattacactggaccaccaggaccacctgggcttcctggacctaaaggatca
acaggttctcaaggaccaaggggctatcaaggtgaaacaggacagcccggtgctccagga
agaccaggaagctctgagagagtatcgacatatgctgcaggaagtgggatctctggacca
ccaggtccaccagggcctcctggacatccaggaccacaaggaatcaaaggtgacactgga
gctcctggaattccgggtgcttcaagaggctccatctcagtcacttcaggccctcctggt
cctccaggtcctcctggtccaccaggccagacgggctccttctcctcttcttctgagatg
cgccagtacatcactgaatatctgagtagaagccggcaatccagtatccctggacctcca
ggtccacctgggcctccaggagtccctggaaccttctctggctcaatggaggacatctca
acccgtattattgcatacattcaaaggtctggttctggcctcagcatcggagttcagggt
cccccaggcccacctggtcctcctggacctggctctcgaggcctatcggttggtgagctc
atcatcatgcttcagagggatgatgtgaggagatatttgtcaggaccaccaggaccacag
ggaccaccaggaccacagggaccatcaggtggactttcaggcagttacagtgcagagcag
gtcgccatgtacgtcttcaacatcatgaatgacagagggattgctcgaggtccccctggg
ccacctggattacctggacctcctggttcttctagcggaggagtgtctggctttagtacc
gttacaatcgactattctgcactgatgaaaaattcagagttccgctcatggatcaactct
gccgtacaacaaggtcctcctggacctccaggtgtcccagggctgactggccctcctggt
cctcaggggccaccaggagtctccactgccaccgtgttgggggcgggagctcgtggctac
agcatggaggacattcagcgccacctgcagggttcgggattcaggggtcttcctggtcct
cctggtcctcctggtccacagggtccaccaggcagttactctggctcggtttcctacagt
ggaaacctccctcgggagagtatccgcgctgaagttcaggagtatctgaccagtgacaat
gtacgtcgttacatcaccggacctccggggcccaccggacctccaggaccaaggggacct
caagggcaacgcggcgagccgggttacagccagagctacgtgcagagccagagttactct
cagggtgacgcccgcttgcgctctgatcagagagacatcagcaaactcagtgagacgctg
gactactccaacgttgctttgaaagttaccgactacatccggaatcaaggcctgttgcag
gagtatctggtcgagggcccgtcgaggacgaacgtgagagcgattcaaggacctccgggt
ccacctggcccccccggaccagttggttacagccgcgtcatcgggtcctacggcaacgtc
acggctgacctcatggaattcttcagagcctatggcaccatccccggtcctccaggaagc
attggaccaaagggagacagaggatacccaggacccagaggagagaagggtgatcctgga
cagccaggtttacctggattaccaggggcgtacacgatccagattccacacaaagtgcag
aagagggacacagtcaataaaatgctgcgtcgtcgccagctgcgtcctcctgcggcaacg
ggtggctga
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integrated database retrieval system
