Paralichthys olivaceus (Japanese flounder): 109634087
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Entry
109634087 CDS
T06037
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109634087 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109634087 (xab2)
03041 Spliceosome [BR:
pov03041
]
109634087 (xab2)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109634087 (xab2)
Spliceosome [BR:
pov03041
]
Complex B
Other components
Prp19-related factors
109634087 (xab2)
Complex C
109634087 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
TPR_MalT
NRDE-2
SNAP
TPR_1
DUF4515
Motif
Other DBs
NCBI-GeneID:
109634087
NCBI-ProteinID:
XP_019949919
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNASKSTLNMIYERALKELP
GSYKLWYSYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRTLSLPETAIRVYRRYLKLSPQNAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEIGKDEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGSFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETGERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTATFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKAITTTTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAQLSKQANPDEIDIDDDDEDDDEDQGPEEVRLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgttaaacggaaaacccgatgttatgtttgaggacgatgatctgccctatgaa
gaggagattatccggaacccgtactcggtcaagtgctggatgcgttacatcgaattcaaa
cagaacgcatccaaatccaccctgaacatgatctatgagcgggctctgaaggagctgcct
ggcagttataagctgtggtacagttacctgagagagagacggaaacaagtcaaagggaaa
tgcatcacggaaccagcttatgaagagatcaataattgccatgaaagggctctggtgttc
atgcataagatgcccagaatatggctcgattactgccagttccttgtgtctcagagcaag
atcacgagaagtcggcgaacatttgaccgtgcactcagagctcttcctgttactcagcac
ccacgcatctggcctctgtatctccgcttcgtccgtaccctgtccctgcctgagactgct
atccgggtgtatcgtaggtatcttaagctttctccacaaaatgcagaggaatacatagac
tatttacggtctgttggccgcttggatgaagcagctgtgcgtctggcagcagttgtgaat
gacgaaagctttgtgtccaaagagggaaaatctaactatcaactgtggcatgagctgtgc
gacctaatctcccagaaccctgataaggtgacttccctgaatgtaggagccatcatccga
ggaggcctcacccgcttcactgaccaacttggaaaactttggtgctctttagctgactat
tacatcaggagtggccactttgagaaagcccgcgatgtatatgaggaggccatccttaca
gtggtgacagtgagggatttcacgcaagtgtttgatagctatgcccagttcgaggagagc
atgattgctgccaagatggagaccactgctgagattgggaaggatgaagaagatgacata
gacctggagcttcgacttgcccgctttgagcagcttatagcccgacggcccctccttttg
aacagtgttctgctgaggcaaaacccccataatgtgcacgagtggcacaagcgggtaaaa
ttgtacgatggcaatccacgacagattatcaacacatacactgaggcagtacagacagtg
gatccaatgaaggccacagggaagcctcattccctctgggtctccttcgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatctttgagaaggctaccaaggtgaac
tacaagcaggtggatgatcttgctgcagtgtggtgtgaatatggggagatggagcttcgc
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatctaag
aaagcagagtactttgatgcatctgagccagtccaaaacagggtgtacaagtccttgaag
gtctggtctatgctggcagacttggaggagagtcttggctctttccagtctacgaaggca
gtgtatgaccgtattattgacctccgcatcgcgacgccacagatcatcatcaactatgcc
atgtttcttgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatc
gctctcttcaggtggccaaacgtttatgacatctggaacacttacctcaccaagttcatt
gatcgatacgggggcaagaagctggagagggcaagagatttatttgaacaagcccttgat
ggctgccccgccaagtttgccaagaccatttacctgttgtacgccaaattggaggaagag
tatggattggcacggcatgcaatggctgtatatgaaagagcgacacaggcagtcgaaact
ggggagagacatcacatgttcaatatctacatcaagagagccgctgaaatttatggtgtt
acttataccagagcaatttaccagaaagccattgaggtccttcctgatgagcatgcgagg
gacatgtgtctgcgattttctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggttacagctactttctggcag
gcctggaaagaatttgagatccgccatggaaatgaggacaccattagagaaatgctgagg
ataaaacgcagtgtccaggccacatacaacacccaggtcaacttcatgtcctctcagatg
atgaaggctataacaaccaccacaggcactgtttcagatcttgctccaggccagatggga
attgatgacatgaagatgttagagcagaaagcacaacagcttgctgcagaagccgagcag
gacaaacctaagcccaaagagaagattctcttcgtcaggagtgacacttctcgcagtgag
ttggctcagctttctaaacaggctaatcctgatgagatcgacattgatgatgatgacgag
gatgacgatgaagaccaaggaccagaagaggtgcggcttgaacagaagagcgtccccaca
gctgtctttggaggactcaaagacgactga
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integrated database retrieval system
