Paralichthys olivaceus (Japanese flounder): 109634842
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Entry
109634842 CDS
T06037
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03020
RNA polymerase
pov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109634842 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
109634842 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pov03021
]
109634842 (polr2a)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109634842 (polr2a)
Enzymes [BR:
pov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109634842 (polr2a)
Transcription machinery [BR:
pov03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109634842 (polr2a)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109634842 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
109634842
NCBI-ProteinID:
XP_019951120
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRLSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILGKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDISKEKGHG
GCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEVFILGMDPKF
ARPEWMILTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFRFDCTNERALRRMLQEDVVKDVLTNAHVQSVLEREFDKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINARTPTDLNPLRVVEGVHELSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFNEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SAHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPLSGMSPAMTPWNTGATPAYGAWSPGVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPSSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccactgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggttatccgtgacagaaggggggatcaag
tacccagaaacaacagaaggaggacgtcctaaacttggcggccttatggacccaagacaa
ggtgtcatagagagaacgggaagatgtcagacatgtgcaggcaacatgacagagtgtcca
ggccacttcggacacatagaactggcaaagccagttttccatgttggcttcgtaaccaag
attatgaaggttctccgatgtgtgtgcttcttttgctccaagctattagtggattctaac
aacccaaagattaaagatatcctggggaaatctaaagggcagccacgaaagcgcttgaca
catgtgtacgagctgtgcaaaggaaaaaacatatgtgaaggaggggaggaaatggacaac
aaatttggaatggagcaacaggagacggaggaggacatatctaaagagaagggtcacggt
ggctgtgggcgctaccagccacgcatcagacgctctggcttggagctgttcgctgagtgg
aaacacgttaatgaagactcgcaggagaagaaaatcctgctgagtccggagcgtgtacac
gagatcttcaagcgcatctccgacgaagaggtctttatcctgggcatggatcccaagttc
gcccgccctgaatggatgattctgactgtgttgcctgtgcctccactcgctgtgaggcct
gcggtcgtcatgcagggatctgctcgcaaccaggatgacttgacccacaagctggctgat
attgtcaagatcaacaatcagctgagaagaaacgagcagagtggtgcagcggctcacgtc
atagctgaggatgtgaagctgcttcagtttcacgtagccacaatggtggacaatgaattg
ccaggcttgcctagggcaatgcaaaaatctggccgccctctcaaatccgttaaacaacgt
ttaaagggaaaggaggggcgagtccgaggtaacctaatgggaaagcgtgtggatttctct
gcccgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtcggtgtacctcgg
tccatcgcagccaatatgaccttcccagaaattgtcacaccctttaacattgacagactt
caagagctggtacgacgaggaaacagccagtacccaggagccaaatacatcatccgtgac
aacggagacagaattgacctgcgcttccatccgaaaccaagtgaccttcatctgcagatc
ggctataaggtggaaagacacatgtgtgatggggacatcgtcattttcaaccgacagcct
acactacataaaatgtccatgatggggcacagggttcggattctgccctggtccacattt
cgactcaaccttagtgtcaccaccccatacaatgctgactttgacggggatgagatgaac
ctccacctacctcagtccctcgagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacacactc
acagctgtgcgcaaattcacaaagagagacgtcttcttagagaggggtgaagtcatgaac
ctcctcatgttcctctccacctgggacgggaaaatgccccaaccggccatcctcaagcca
cgtccactgtggacaggcaagcagatcttcagtctcatcattccaggacacatcaatgtc
atccgcacccacagcacccacccagacgaggaggacagcggtccctacaaacacatctca
cccggggacaccaaggtcatcgtggagaatggcgagttgatcatgggcatcctttgtaag
aagtctctcggaacctcagctggttccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtagtcaacaactggctgctcatc
gagggtcattccattggtatcggtgactccattgctgatgccaaaacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagcccactcccggtaacacgctgaggcagacctttgagaaccaggtgaat
cgcatcctcaacgacgctcgtgacaaaactggatcctctgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccggttctaagggttcaaagattaacatctca
caggttatcgctgtggtggggcaacagaacgtggagggtaaaagaatcccctttggcttc
aaacaccgcacgctgcctcacttcattaaagatgactacggtcccgagagtagaggcttt
gtggagaactcctacctggctggcttgacaccaactgagttcttcttccacgccatggga
ggcagagagggtctgatcgacacagctgtcaagactgctgagactggttacattcagcgt
cgtctgatcaagtccatggagtctgtgatggtgaagtacgacggcacagtgcggaactcc
atcaaccaggtggtccagctgcgctacggtgaagacggcctggcaggagagaatgtggag
ttccaaaatctggcaaccctcaaaccctcacacaaggcctttgaaaagaagttcagattt
gattgcaccaatgagcgcgcactgaggcggatgctgcaggaggacgtggtaaaagacgtc
ctgaccaacgcccatgtgcaaagtgtcttggagagagagtttgataagatgaaggaggac
cgggagatccttcgagccattttccctacaggggacagcaaggtggtgctgccatgcaac
ctggccagaatgatctggaatgctcagaagatcttccgcatcaacgctcggaccccaaca
gacctgaatcctctgagagtggtcgagggtgttcatgagctgagcaagaagctggtgatt
gtgaacggcgaggacccgctgagcagacaggcccagcagaacgccactctgctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgacggaggagttccgcctttccacc
gaggctttcgactggctgctgggagagattgagaccaaattcaaccagtccattgcgcac
ccaggtgaaatggttggcgctctggctgctcagtcgctgggagaaccagctactcagatg
accctgaacactttccactacgctggtgtgtcagccaagaacgtaacacttggtgtgcct
cgtcttaaagagttgatcaacatctccaagaggcccaagacgccctcactgactgtcttc
ctgctgggtcaggctgcacgtgacgctgagagggccaaagacatcctctgtcgactggag
cacaccacactccgaaaagtgacagccaacactgccatctactatgaccccaacccccag
aacacagtggtggccgaggaccaggagtgggtgaacgtctactatgaaatgcctgacttt
gatgtgacacgcatttcgccatggctgctccgtatcgagcttgaccgcaagcacatgact
gatcgcaaactaactatggaacagatcgcagagaagatcaacgcaggttttggagatgat
ctgaattgtatcttcaatgacgacaatgctgagaagctggttctgcgaatcagaatcatg
aacagcgatgagaacaagttcaacgaggatgaggaggtggtggacaaaatggacgatgac
gtgttcttgagatgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcataatc
acagaggacggtgagttcaaggccctgcaggagtggatcctcgagacggacggcgttagt
ctcatgagagtcctgagcgagaaggacgtggatcccgtcagaaccacctccaatgacatc
gtggagatcttcacggtcttgggaattgaggctgtgcgaaaggcgctggagagggagttg
taccacgtcatctcctttgacggttcctacgtcaactaccgtcacttggctctgctctgt
gacaccatgacctgccgcggtcacctgatggccatcacacgtcacggcatcaaccggcaa
gacacaggaccacttatgaagtgttcctttgaagagacggtggatgtgttgatggaggca
tcagcacacggtgaatgtgaccccatgaagggcgtgtcagagaacatcatgcttggccag
ctcgccccggctggtacaggctgcttcgatttgctgttggatgctgagaagtgtaaatac
gggatggagattcccacaaacatacctggtatcagtgtggctggacccactggaatgttc
tttggctcagtgccgagtcccctgagtggcatgtcacctgccatgacgccgtggaacacc
ggggctacgccagcctacggcgcctggtctcctggtgtcggaagcggcatgactcctggt
gcagcaggtttctctcccagtgcagcttcagacgcaagtggcttctctccaggctactcc
cctgcctggtccccgactcctgggtcccctggttctccaggacctgcaagcccgtacatc
ccatctccaggtggagccatgtcaccaaactactctcccacctcaccggcctacgagcct
cgctcccctggtggctacaccccacagagcccaggctactccccaacatcaccctcctat
tcccccacctctccctcttactcccccaccagccccaactacagcccgacctctccttcc
tactcccccacttcgcccagttactccccaacttctccctcctattcgcccacatctccc
tcctattcccccacctccccatcttactcccccacctccccgtcctactcccccacctcc
ccgtcctactcccccacctcgccaagctacagcccgacatcgccgagttacagcccgacg
tcaccgagctactctcccacctcaccctcttactcgcccacttcaccttcatactctccc
acctctccctcttactctcccacctccccctcatactcccccacctctccctcctactcg
ccaaccagtccgagctacagccccacatcaccaaactacactcccacctctccaagttac
tcccccacctccccctcctactccccgacatcgccctcttactccccatcctcccccaac
tacaccccgaccagccccaactactcgcccacctcaccctcgtactctccaacctctccg
tcctactctccttccagtccacgctataccccgcagtcacccacctacacaccaagctca
ccctcatacagccccagctcgccctcctactcccccacctcccccaaatacaccccgact
tcaccttcatacagcccgagctccccggagtacactcccacctctccaaagtactcccct
acctctccaaagtactccccaacatctccgaagtattcccctacttctcccacctactcc
ccaacaacgccgaaatacagccccacctctcctacctactctccaacctctcccacctac
acccccaccagccccaaatactctcctacctccccaacttactccccaacctcaccgaag
tattcacctacatctcctacgtactcgccaactagtcctaaaggctccacctacagcccc
acctcccctggatacagccccacctcacccacctacagcccggccatcagccccgacgac
agcgatgaggagaacaactga
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integrated database retrieval system
