Paralichthys olivaceus (Japanese flounder): 109634901
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Entry
109634901 CDS
T06037
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109634901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pov03041
]
109634901
03009 Ribosome biogenesis [BR:
pov03009
]
109634901
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109634901
Spliceosome [BR:
pov03041
]
Complex A
U2 snRNP components
U2 related factors
109634901
Complex B
109634901
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109634901
Ribosome biogenesis [BR:
pov03009
]
Eukaryotic type
90S particles
Helicases
109634901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_19
AAA_22
SRP54
Atrophin-1
ResIII
AAA_29
Flavi_DEAD
nSTAND3
AAA_7
T2SSE
AAA_30
Motif
Other DBs
NCBI-GeneID:
109634901
NCBI-ProteinID:
XP_019951272
LinkDB
All DBs
Position
Unknown
AA seq
742 aa
AA seq
DB search
MRRGYDRDRDDRSKERARDRDRERERERDRDRDRDVKSSGVHNNPTAYSGGYLKPNPIQQ
QINPFTNLPHTPRYYEILKKRLQLPVWDYRQKFNEIMMQNQSFVLVGETGSGKTTQIPQW
CVEMVRSMQGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTVL
KYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRPDLKVIVMSA
TLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEVDEGDLL
LFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPNKPNGAI
GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAVSKASAQQRAGRA
GRTCPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAP
ETLMRALELLNYLAALNNDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITAM
LSVPQCFVRPTEAKKLADESKMRFAHIDGDHMTQLNVYHAFKQNHDSTQWCYENFVNYRS
LMSADNVRQQLSRIMDRFNLPRRSTEFNSRDYYINIRRALVTGFFMQIAHLERTGHYLTV
KDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYEMSNFPQ
CEAKRQLERIVAKLSSKEYSQY
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtggctacgacagagaccgcgatgatcggtcaaaagagagggcccgtgaccgg
gaccgagaacgggagcgggagcgagaccgtgaccgagacagggacgtgaagtcatctggg
gtgcacaacaacccgactgcatatagtggaggctaccttaagccaaaccccatacagcag
caaatcaaccctttcaccaacctgccccacacgccacgatactatgagatcctcaagaag
cgactgcagctgcctgtctgggattacagacagaaattcaatgaaatcatgatgcagaac
cagtcctttgtgctggtgggagagacgggctctggaaagaccacacagatcccccagtgg
tgtgtggaaatggtgcgctccatgcagggtccaaagagagcggtggcctgcacccaaccc
cggcgggtagcagccatgagtgtcgctcagagggtggccgatgagatggatgtcatgctg
ggccaagaggttggctattccatcaggtttgaggactgcagctctgccaagactgtactc
aagtatatgacagatggaatgttgctgcgggaagccatgaacgatcccctgctggagcgc
tacggtgtaatcatcctggacgaggcccacgaacgcacattagcgacagatatcctcatg
ggggttcttaaggaggtggtccgccagaggcctgacctcaaggtcattgtcatgagcgcc
acgctcgacgccggcaagttccaggtgtacttcgacagttgcccgctgctgaccatccct
ggacgcacccaccccgttgagattttctacacaccggaaccagaacgcgactacctggag
gcggccatccggactgtgatccagatccacatgtgtgaggtggatgaaggggaccttctg
cttttcctcactggacaagaggaaattgatgaagcctgcaaacgaatcaagagagaagtt
gacgacctggggcctgaagttggcgatatcaaaatcatcccgttgtactccactctgcct
ccgcagcaacagcagaggatcttcgagccacccccacccaataaaccaaacggtgcaatc
ggaaggaaggtcgtcgtgtcaacaaacatcgcagagacgtcccttaccatcgacggcgtg
gtgtttgtaattgatcccggatttgccaagcaaaaggtgtataacccaagaatccgagtc
gagtcgcttttggtgacagccgtcagcaaggcctcagctcagcagagggcaggtcgtgcg
ggaaggacgtgcccaggaaagtgtttccgcctttacactgagaaagcctacaagacagaa
atgcaggacaacacctatccagagatcctgaggtcgaacctgggctctgtggtgctgcag
ctgaagaaactgggtattgatgacctggtgcactttgacttcatggacccaccagcccca
gagaccctgatgcgagccctggagttgctgaactacttggcagcgctcaacaacgatggc
gacctgactgagttgggctccatgatggcagagttccccctggacccccagctggccaag
atggtcatcgccagctgtgaattcaactgttcgaatgagatcctctccatcactgccatg
ttgtcagtcccacagtgcttcgtccgacccacggaggctaagaagctggccgacgagtca
aagatgcgcttcgcccacatcgacggagaccacatgacgcaactcaacgtctaccatgcc
ttcaaacaaaaccacgactccactcagtggtgctatgagaactttgtcaactaccgctcg
ctgatgtcggcagacaacgtacggcagcagttgtccaggatcatggaccgcttcaatctg
ccgcgacggagcactgagttcaacagcagagactactacatcaacatccgccgagcgctg
gtcactggcttcttcatgcagatcgctcacctggagcgcactggccattacctcacggtg
aaggacaaccaagtcgttcagctgcacccctccaccgtgctggaccacaagcccgagtgg
gtgctctacaatgagtttgtgctcaccaccaagaattacatccgcacgtgcacagacatc
aaaccagagtggttggtgaaaattgccccgcagtactacgagatgagcaacttcccccag
tgtgaagcaaagagacagttggagcgaatcgttgcaaaactctcatccaaggaatactct
cagtactaa
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integrated database retrieval system
