Paralichthys olivaceus (Japanese flounder): 109634906
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Entry
109634906 CDS
T06037
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109634906 (col25a1)
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109634906 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109634906
NCBI-ProteinID:
XP_019951276
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MEIAEARGASKCVEKMEKVAPKKRRHCSTTLLNIISSLCSVGSVAFCVLLSINAADIQNR
VVDLENVNGGQPFIRATGYSTDDLNSLVQQRVDELLSQRSYENFVKIRTARQTSPECNCP
PGPPGKRGRRGRDGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLI
KGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDLGQPGETGPVGPEGPEGP
KGSLGLPGIPGVDGLKGDVGIPGLDGIPGVKGEMGDQGEKGDMGEDGPKGDMGEKGDAGS
SAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDH
GPPGKGERGEIGYVGPKGSQGEAGTPGPKGSKGETGDKGDLGLIGPKGPPGQKGDQGATE
IIDYNGNIQEALQKITTITVTGPAGPPGPIGPQGVKGDRGMPGLPGLDGERGYKGSKGDM
GMPGASGEKGATGLPGLPGVNGLKGEKGDLGLPGPQGPSIIGSPGPLGPHGPPGPMGPHG
FPGPKGESGLHGLKGMRGEPGHKGDRGPLGLPGASGLDGKPGIGGMDGPSGPAGPAGPKG
DIGERGAQGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGEKGKKGKKGPKG
EKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatctaagtgcgtggagaaaatggagaaagtggca
cctaagaagcgacggcattgcagcacgaccctgctgaacataatctcgtctttatgttcg
gtggggtccgtcgccttctgcgtccttctgagcattaacgcagcggacattcagaaccgg
gttgtggatttggagaatgtgaatggcggccagccctttatccgcgccaccggttactcc
acggatgatttgaactcactggttcagcagagagttgatgagctgctctcgcagcgctcc
tatgaaaattttgtcaagattcggactgccagacaaacatcacctgaatgcaactgccct
ccaggacctccgggaaagcgaggaagaagaggccgcgatggagaacctggacctcctggt
cctccgggtccaaagggtgaaaagggggatcaaggcgaccagggaccacggatggtcttc
cctaagatcaatcatggctttctttccgctgaccagcagctcataaagcgacggctcatt
aagggagatcaggggcaggccggaccgcctgggcctccggggccaccaggccctccaggg
ccaagggggcctccaggggacactgggaaagatgggcccagaggtgtgcctggtctacca
ggtgatctggggcagcctggagaaacaggacctgtggggcctgaaggaccagaagggcca
aagggttcccttggacttcctggaatcccaggtgttgatggactgaagggggatgtaggc
attccaggattggacggtatccctggagtcaagggtgaaatgggagatcaaggtgaaaag
ggtgatatgggtgaagacggtccgaaaggggatatgggggagaagggagatgcaggctcc
tccgcagctggcatcaagggtgaacctggagagcctggacgaagtggacacaagggagag
ccaggacttccagggctgcctggactcccagggataaagggtgagcctgggttcctcggc
ccccagggagagccaggtcttcccggactcccaggaacgaagggtgagaggggcgaccac
gggccaccagggaagggtgagcgcggagaaattggatacgttggaccaaaggggtcacaa
ggagaggccggtacacctggtcctaaagggtcaaagggggagactggagataaaggagat
ttgggactcatcggcccgaaggggccccccgggcagaaaggagaccaaggggccactgaa
atcatcgactacaatggaaacatacaggaggctttacagaagattaccactattacagta
acgggtcctgctgggcctccggggccaattggacctcagggtgtaaagggggatcgaggt
atgcccggtctccctggactcgatggagaaagaggctacaaaggttcaaaaggagacatg
ggaatgcctggagcctcaggggagaaaggagcaactggtttacctggtctacctggtgtc
aatgggctcaagggagaaaagggagatctgggtctccctggtcctcagggtccttcaatt
attggctctccagggcctctagggccccatggaccgccaggacccatgggaccccacggt
ttccccggaccaaagggtgaatctggattgcatggtttgaaggggatgcgaggggaaccg
ggacacaaaggggatcgtggacctctgggtctccctggagcctccggcttggacggcaag
cccggaattgggggcatggatggaccgtcaggtccagctggtcccgctgggccaaagggt
gacataggtgagagaggagcacagggtgagccaggaccaaggggaccttatggactacct
ggagctgctggaacaccaggcttagacgggttgccaggcttaaggggagagaaaggcgac
gttggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaagggg
gagaaaggagaacagggtgcccctggattagatgcaccctgcccattgggcccagatgga
ttaccaatgcctggatgctggcagaagtga
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