Paralichthys olivaceus (Japanese flounder): 109635214
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Entry
109635214 CDS
T06037
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04510
Focal adhesion
pov04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109635214
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109635214
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109635214
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109635214
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
VWC2L_2nd
Amnionless
Motif
Other DBs
NCBI-GeneID:
109635214
NCBI-ProteinID:
XP_019951798
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLAVVRCQEEDDQEAGGCIQDGQQYSDKDVWKPEPCRICVC
DSAAVLCDEIICEEIRECANPIIPSGECCPICPADASAPIEILGARGQKGEPGEIADVVG
PRGPPGPMGPSGEQGPRGEAGAKGDKGNSGPRGRDGEPGIPGNPGAAGPPGPPGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGAAGPMG
PRGPAGPSGKSGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGEGGSSGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGSEGAQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPGGPQG
PPGPTGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVSGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKPGEKGLLGRPGLRGLSGKDGETGSSGPPGPAGPAGERGEQGQPG
PSGFQGLPGPSGAPGEAGKPGDQGVSGEGGAPGAVGPRGERGFPGERGGAGAQGLQGPRG
IPGTPGSDGPKGAIGPAGAAGPQGPPGLQGMPGERGAGGISGAKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGPGGPSGAAGARGAPGDRGEGGPPGPAGFAGPPG
ADGQPGAKGELGETGQKGEAGSSGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGSSGPAGAAGKDGPKGARGDSGPPGRQGDPGLRGLAGTQGEKGEPG
EDGPPGADGPSGPQGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGAPGSAGDRGPPG
PVGPPGLTGPSGETGREGTPGSDGPPGRDGAVGVKGERGNTGPGGAPGAPGSPGAPGPVG
PLGKQGDRGESGAQGPAGASGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDSGSAGPAGPSGAKGPPGPGGPAGKDGSNGLLGPIGPPGPRGRSGESGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENLRSPDGSQKNPARSCRDLKLCHPEWKSGDYWVDPNIGSTADAIKAYCNMETG
ETCVYPSIAKVPKKNWWTSKSKDRKHIWFGETMNGGFHFDYAQDGPAAMAASVQLTFLRL
LSTEVSQNLTYHCKNSIAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKK
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctggccgtggtcagatgtcaggaagaggacgaccaggaggcaggtggctgcatccaggac
ggccagcagtatagtgataaggatgtgtggaagccagagccgtgtcgtatctgtgtgtgc
gacagtgcagcggttctgtgcgatgagataatctgcgaggagatcagagagtgtgccaac
cccatcatcccgtctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagatactcggtgctaggggccagaaaggcgaacccggagagatcgcagatgttgtagga
ccaagaggaccacctgggcccatgggcccatctggtgagcaaggaccacgtggagaagct
ggtgctaagggtgataagggaaattctggacctcgaggaagagatggtgagcctggcatc
cccggaaaccccggagcagctgggccaccaggaccaccagggcttggagggaactttgct
gctcagatggctggaggctttgacgagaagtccggaggtgctcagatgggtgtgatgcaa
ggaccaatgggtcctatgggccctcgtggtccccctggaccttctggagctcctggacca
cagggtttccaaggcggccctggtgaggctggagagcctggtgcagcagggccaatggga
ccccgtggaccagctggaccttctggaaaatcaggaagtgatggtgaggctggcaaacct
ggcaaagctggtgagcgtggacctgcagggcctcagggtgctcgtggattccctggaact
cctggacttcctggaattaaaggacacagaggtcaccctggtctggatggagctaaggga
gagactggtgctgcaggagccaagggtgagggtggttcctctggtgaaaatggtgcccct
ggaccaatgggtccacgtggtctgcctggtgagaggggacgtcctggagcagctggagct
gcaggtgcccgtggaaatgatggcttgcccggtcctgctggtccacctggacctgttggt
ccagctggagctcctggtttcccaggatccccaggagccaagggagaagctggtcctact
ggtgcccgtggatctgagggcgcacagggaccccgcggagagggaggtacccctggatct
cccggacctgccggagcatcgggtaaccctggtactgatggtattcctggagctaaggga
tctgctggtgcttccggtattgctggtgctcctggattcccaggccctcgtggcccacct
ggaccacagggagctacaggacctctggggccaaagggacagtctggagaccctggtctt
cccggattcaaaggtgaagctggacccaagggagagcttggccccggtggtcctcaaggt
ccccctggccctactggtgaagaaggaaagagaggcgccagaggagagcctggagctgct
ggaccactcggacctccaggagagagaggagctcccggtaaccgtggtttccctggtcag
gatggtcttgctggtgctaagggtgcccccggtgaccgtggtgtttctggggctgctggg
cctaaaggtgctactggagaccctggacgcacaggagagtccggccttcccggagccaga
ggtctcactggtcgtcctggagatgctggtcctcagggcaaagttggagcctcaggagcc
cctggtgaggacggtcgccccggcccacctggtcctcagggagcccgtggacagcccgga
gtgatgggattccctggaccaaagggagccaatggtgaagctggaaagccaggagagaag
ggtctcttaggtcgtcctggtcttagaggtttgtctggaaaagatggtgagactggttct
tctggacctcctggccctgctggccctgctggagagagaggagagcaaggacagcctgga
ccttctggcttccagggtctgcctggaccatctggtgccccaggagaggctggaaaacct
ggagaccagggtgtttctggagagggcggagctcctggtgctgttggacccagaggcgaa
cgtggtttccctggtgagaggggtggtgctggagctcaaggtcttcagggacctcgtgga
attcctggaacaccaggatctgatggacccaagggagccattggaccagctggtgctgct
ggacctcagggaccccccggcctgcagggtatgcctggagagaggggagctggtggcatc
tcaggagctaagggagacagaggtgacaacggacagaagggacccgagggggctcctgga
aaggatggtgctagaggtttgactggtcccattggtccacctggcccatctggaccaaac
ggtgccaagggtgagactggacctggtggaccttctggtgctgctggtgctcgtggtgct
cctggtgaccgtggtgagggtggtcctcctggacctgctggttttgctggacctcctggt
gcagatggtcagcctggagccaagggagagcttggtgagactggacagaagggagaggct
ggttcttctggacctcagggaccatctggagctcctggacctgtgggacctactggtgta
tctggacctaaaggagctcgtggtgctcagggagctcctggtgccactggattccctggt
gctgccggcagagttggatctcctggccctaatggtaaccctggctcttctggtcccgct
ggtgctgctggcaaagacggaccaaagggtgctcgtggtgacagcggccccccaggaaga
cagggagaccctgggctgcgtggacttgctggcacacaaggagagaagggagagcccgga
gaggatggaccccctggtgctgacggaccttcaggtcctcagggtctgggtggatcccgt
ggtattgttggtttgcctggtcagcggggagagagaggcttcgctggtcttcctggacct
tctggagagcctggaaaacagggagctcctggttccgctggcgaccgtggacctcctgga
cctgtgggaccccctggacttacaggaccttctggagagactggtagagagggtacccct
ggatcagatggacctcctggtagagatggagctgttggagtcaagggagagcgaggtaac
actggtcctggtggcgcccccggtgctccaggatcccctggtgcccctggacctgtcgga
cctctcggcaagcagggagacagaggagagtctggcgctcaaggacctgctggagcctct
ggacccgctggcgctagaggaatggccggaccccaaggacctcgtggagacaagggagag
gctggtgagactggagagagaggacagaaaggtcaccgtggcttcactggtctgcagggt
ctccctggacctcctggtcccgctggagattctggatctgctggacctgcaggcccaagc
ggcgctaagggaccacctggaccaggtgggcctgctggcaaagacggatctaacggactg
ctcggccctattggaccgcctggacctcgtggacgctctggagaaagtggtcctgctgga
cctcctggtaacgccgggccccccggtcctcctggtcctcctggtcctggcatcgacatg
tctgcctttgccggtctgggtcagacagagaagtcccctgatcctctcaggtacatgagg
gccgatgaggcctctagctccctgaggcagcacgatgttgaggtcgattccacactcaag
tccctcaacaaccagattgagaacctgcgcagccctgacggctcccagaagaaccctgct
cgctcctgcagggacctgaaactgtgtcaccctgagtggaagagcggtgattactgggtt
gatcccaacattggcagcaccgctgacgccatcaaggcctactgcaacatggagactgga
gagacctgcgtctacccaagcattgccaaggtgccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggttcggagagaccatgaatggaggattccactttgac
tacgctcaggacggcccagctgccatggctgccagcgtccagctgacattcctgaggctt
ctgtccactgaagtttcccagaatctcacttaccactgcaagaacagcattgcctacatg
gaccagaccacaggcaacctgaagaaggctttgctgctgcagggctccaacgatgtggag
atccgtgcagaaggcaacagtcgcttcacgtacagtgtgttggaggatggctgcaagaaa
cacacaggccggtggggcaagactgtctttgagtacaaaacacagaagacctcccgtctg
ccaatcgtggacattgctcctatggacatcggaggagctgatcaggagtttggagtggat
gtaggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
