Paralichthys olivaceus (Japanese flounder): 109635387
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Entry
109635387 CDS
T06037
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04510
Focal adhesion
pov04512
ECM-receptor interaction
pov04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109635387
04518 Integrin signaling
109635387
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109635387
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109635387
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109635387
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109635387
NCBI-ProteinID:
XP_019952095
LinkDB
All DBs
Position
Unknown
AA seq
1442 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEDEQEDIISCTQDGQSYNDKDVWKPQPCRICVC
DTGTVLCDEIVCEDLKDCPKPEIPFGECCPICAADPSTPIGTPGAKGQKGEPGDITDVVG
PRGPSGPMGPPGEQGLRGSRGDKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
PMGPRGPSGSPGKPGDDGEAGKSGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGETGAVGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGDPGIPGFKG
EAGPKGELGPAGPQGAHGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAG
PKGAPGERGPAGASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGSGEDG
RPGPPGPQGARGQPGVMGFPGPKGATGESGKSGEKGLAGAAGLRGLPGKDGETGAAGPPG
PAGPAGERGEQGQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGGAGATGPRGERGFPG
ERGAAGPQGLQGPRGLPGTPGTDGPKGAIGPAGGAGAQGPPGLQGMPGERGGAGIPGPKG
DRGDIGEKGPEGASGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGTPGDRG
ETGPPGPAGFAGPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKG
ARGAQGPPGATGFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAG
LRGPAGAPGEKGDAGEDGPPGPLGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPG
KQGGAGGTGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAG
APGAPGAPGASGPVGPTGKQGDRGEAGAQGPAGPSGPAGARGMPGPQGPRGDKGEAGESG
ERGQKGHRGFTGLQGLPGPPGQAGDQGATGPSGPSGQRGPPGPVGPAGKDGSNGMPGPIG
PPGPRGRSGETGPSGPPGNSGPPGPPGPPGPGIDMSAFAGLGQTEKSTDPLRYMRADQAS
GNLRQHDAEVDATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQG
CTIDAIKVFCNMETGESCVQPKPSSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDS
LAPNTAAIQMTFLRLLSTEAAQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEG
NSRFTYSVMEDGCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVC
FL
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctgcttgtagcaacccaagtctgtcta
ttagccgttgtgagatgtcaggaggacgaacaggaggacattattagctgtacacaagac
ggacagagctataatgacaaggacgtatggaaaccacagccgtgtcgcatctgtgtgtgc
gacaccggaaccgtcctgtgtgacgaaattgtctgcgaggacctaaaagactgccccaaa
cccgagatcccattcggagagtgttgccccatctgcgcagctgacccgtccacgcccatc
ggaacacctggggctaagggtcagaaaggcgaacccggagacattaccgatgttgtagga
ccaagaggaccatctggccctatgggcccaccaggagaacaaggactccgcggatcgaga
ggagacaagggagagaagggaaaccctggtccccgtggcagagatggtgagcctggcacc
cccggaaaccccggcccccctggacctccagggccgaacggaccccctggccttggcgga
aactttgcagctcagatggccggtggctttgacgagaagtccggcggagcacagatgggt
gtgatgcaaggaccgatgggccccatgggacccagaggaccacctggccccagtggatca
cctggcccacaaggtttccagggtaacccaggagaggctggagagcccggtcaatctggc
cccatgggcccccgtggcccctctggatctcctggaaaacctggagatgacggtgaagct
ggaaaatctggtaaatcaggcgagcgtggaccttcaggacctcagggagcgcgtggattc
ccaggaactcccggcctgcccggcatcaagggtcacagaggttattcaggtcttgatggt
gcaaagggagagaccggagctgttgggtctaagggtgaggctggtgctcccggagagaat
ggcgcccctggacctatgggacctcgtggtttgcccggcgagagaggtcgtcctggaccc
agtggagttgctggagctcgtggaaatgatggtctgcccggccctgctggtcctccaggc
cctgtcggtccttctggagctcctggcttccctggctctcctggttcaaagggagaggct
ggtcctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtcaggtacc
cctggatctcccggaccttctggcgcttctggggacccaggtattccaggattcaaggga
gaggctggacccaaaggagaacttggacccgctggtcctcagggagcacatggcccccag
ggagaggagggtaagaggggacccagaggagagcccggtgctgctggaccacttggacct
cccggagagagaggatcccctggtaaccgtggtttccccggtcaagatggtctggctggt
cccaagggagcccctggtgagcgtggacccgccggtgccagcggtcccaagggtgctaac
ggtgaccccggccgtcctggagagtctggtctgcctggtgccagaggcctaactggacga
cctggtgacgctggtcctcaaggaaaagttggaccttctggaggttctggtgaggatgga
cgtcctggaccccctggcccacagggagcccgcggacagcctggcgtcatgggattccct
ggacccaagggagcgactggtgagtctggcaagtctggagagaaaggactggctggagct
gcaggtctgagaggtctgcccggcaaagatggagaaactggcgctgctggaccccccggc
cccgctggccccgctggagagagaggagagcaaggacagcccggaccctccggcttccag
ggtctgcctggacctccaggcccccctggagagggaggcaagcccggagaccagggagtt
cctggagaggctggaggtgccggagctactggacccagaggtgagcgtggtttccccgga
gagagaggagctgctggtcctcagggtctgcagggacccagaggtctgcctggaactccc
ggaactgatggacccaagggagccattggacctgctggtggtgctggagctcagggaccc
cccggcctgcagggtatgcctggagagagaggtggtgctggcatccccggacccaaagga
gacagaggggacattggagagaaaggacctgaaggtgcctctggcaaagatggtggtaga
ggtctcactggtcccatcggccctcctggtcctggtggccccaacggagagaagggtgaa
tcaggtcctgctggtccctctggagctcccggtacccgcggcactcctggtgacaggggt
gagactggacctcctggacctgctggatttgctggaccccctggcgctgacggtcaacct
ggaaccaagggagagcagggagagtctggacagaagggagacgctggtgcccctggaccc
caaggaccatctggtgcccccggacctgctggtcccacaggtgtatttggacctaaaggt
gctcgtggtgctcagggacctcctggtgccactggtttccctggagctgctggccgtgtt
ggtcctcctggtcccaacggtaaccctggacctgctggtcctgctgggcctcctggtaaa
gacggacccaagggtgtgaggggagatggcggacctccaggccgacagggtgacgctggg
ctccgcggccctgctggagctcctggagagaagggagacgctggagaggacggtcctcct
ggtccactgggtccttcaggtcctcagggtctgggtggtcagcgcggtattgtcggtcta
ccaggacagcgtggtgagagaggcttccccggtctgcccggaccctctggtgagcccgga
aagcagggaggtgctggtggcaccggagaccgtggaccccctggacctgtcggaccacct
ggacttaccggacctgcaggagagcctggcagagagggcaaccctggatctgatggacct
cctggtagagacggttctcctggaatcaagggtgatcgtggtaacactggtcctgctggc
gctcctggtgctccaggcgctcccggcgcctccggccctgttggtcccaccggtaaacag
ggagacagaggagaggctggtgcacaaggacctgctggaccttcaggacccgctggagcc
agaggaatgcccggaccccaaggaccccgtggtgacaagggtgaggctggagagtctggt
gagagaggacagaagggacacagaggcttcactggtctgcagggtctgcccggacctccg
ggtcaagctggagatcagggagctactggacctagtggaccttctggacagagaggacca
cctggacctgttggtcctgctggaaaggacggttcaaacggcatgccaggacccatcggg
ccccccggacctcgtggtcgctctggagagactggtccctctggtcctcccggaaactcc
ggacccccaggtcctcctggtccccccggccccggcatcgacatgtctgccttcgctggc
ctgggccagaccgagaagtccaccgatcccctcaggtacatgagggccgaccaggcctct
ggaaacctccgtcagcacgatgccgaggtcgacgccaccctcaagtctctcaacaaccag
attgagaacatccgcagcccagagggatccaagaagaaccctgctcgcacctgcagagac
ctgaagctgtgccaccctgactggaagagcggagagtactggattgatcccaatcagggc
tgcactattgatgcaatcaaggttttctgcaacatggagacaggagagtcctgcgtccag
cccaaaccttccagcatccctcgtaagaactggtggtccagcaagagcaaagaccgcaaa
cacgtctggttcggagaaacaatgaatggaggattccacttcagctatggtgacgacagc
ctggcacccaacacagctgccattcagatgaccttcctgagactgctctccaccgaggct
gctcagaacctcacctaccactgtaagaacagcgtggcctatatggacgcctcgacaggg
aacctgaagaaggccgtgctgctgcagggctccaacgatgtggagatcagagccgagggc
aacagccgcttcacttacagcgtgatggaggacggctgcacgaaacacacgggccagtgg
ggcaagacggtgatcgagtacagatcgcagaagacctctcgtctccccattgtggacatt
gctcccatggatattggtggagcggaccaggagtttggagtcgaagtcggggcggtctgc
ttcttgtaa
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