KEGG   Paralichthys olivaceus (Japanese flounder): 109635893
Entry
109635893         CDS       T06037                                 
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pov  Paralichthys olivaceus (Japanese flounder)
Pathway
pov03440  Homologous recombination
pov03450  Non-homologous end-joining
pov04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:pov00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    109635893 (rad50)
   03450 Non-homologous end-joining
    109635893 (rad50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    109635893 (rad50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pov03032]
    109635893 (rad50)
   03400 DNA repair and recombination proteins [BR:pov03400]
    109635893 (rad50)
DNA replication proteins [BR:pov03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    109635893 (rad50)
DNA repair and recombination proteins [BR:pov03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     109635893 (rad50)
    BRCA1-C complex
     109635893 (rad50)
   NHEJ (non-homologous end-joining)
    MRX complex
     109635893 (rad50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SbcC_Walker_B SMC_N AAA_15 ABC_tran AAA_29 zf-met AAA_22 AAA_16 AAA_13
Other DBs
NCBI-GeneID: 109635893
NCBI-ProteinID: XP_019952929
LinkDB
Position
Unknown
AA seq 1312 aa
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATCGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISALGVSKPVLNNVIFCHQEESNWPLCEGKALKDKFDSIF
AATKYIKALETMRQLRLAQNHTVKECQVELRYLKQNKEKAQQIRETVDTKEAQLTASKDK
VEKIESQIDPLENRMMDIDTKFGKVMKLDNDIKALESRKKQMEADNQELEDTMEQVFQGS
DEQLQEMYQNHQRTVKEKERRLTDCQKELERAGRECLRLNRVKADLLVEQGRLQLEADRH
TQNIRNRDTQVRSLSSYLEMEGYDRPPFTTLQLESFHRHTTQRLEQEKETASQVLTDLQE
KEQQKQQSIDEMRDKKTGLDRTVELKRDLQAKKQQELRNIRAELQRLEDSSTRLQELENE
LAKAERELQSAVQSSNVEELKVEVVELQREKAELDRAQRRLDQEMETLNTHTSTRTQMEM
LKKDKTEKEDQVRKIKSRHSEDLVSLLGHFPNKKELEDWIYAKSKEINSTRDRLARLNKD
LASSEQNKSHIASELRKKEQQLSSDEEKFFNVCGSQDLEQDLGKLQDDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSEPDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKKDEMMSLRPVRQSIVQFREKELPELRNRLQTVNREIERLKGDLEEQETLLGTLMS
EEETAKACLQDISLMDRYLIDLKEVERKIAQHGAKLQGVDLTRTIQQVSQEKQETQHRLD
TTSSKMELKRKLIQDQQDQIQMLKSSVNETRAVKLQLSSDMQKQQQLEEQSVEFTTEIKD
LTRDIREAKEQLSPLSAALEKLQQEKQELMERKKQRQEEGQEKINAIKDRVKVITTLERD
ITKYVDEGKNEYKEQKESELQETNSQLHDAEKQKEKISKEMGNIRQDIDTQKVKERWLQD
NLTLRKRVEELKDVVAKHEALTKDMGNMQVMQLRQERHEAERKLEDLKKNRSIALGRQKG
FEEEILHYKKELREDQYDKADERYKNKMIIMRTTELVIKDLDIYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcaaagatagacaagatgagcatcctgggggtgaggagctttgggatcgaggataaa
gacaaacaagtaatatctttcttcactcctctgactgtgctggttggacccaatggagcg
gggaaaacgactataattgagtgccttaagtatgcaacatgtggggaacttccccctgga
tctaaaggaggggcttttgttcatgatccaaaggatgcccatgagacagatgtgcgagca
cagattcgccttttattctcggatgtaaatggagagaaagtgaccatccatcgctccatg
tcgtgcactcagaaggcaaagaactactcctttaaaagcttagagcaagttatcactaga
ataaaagacggtgagaaggtgagcttgtcgtctaagtgcggtgaactggaccgggagatg
atttctgccttgggtgtgtcaaagcctgtactgaataatgtcatcttctgtcaccaagaa
gagtctaactggccgctttgcgagggcaaggcacttaaagacaagtttgactccatcttt
gctgcgacaaagtatatcaaagctctggagacgatgcgccagctgcgtctagcacagaac
cacacggtcaaggagtgtcaggttgagctgcgttatctgaagcagaacaaggagaaagcc
cagcagattagagagaccgtggacaccaaggaggctcagctgacggcctctaaagacaaa
gtagagaagatagagagccagatcgatccacttgagaatcgaatgatggacattgacaca
aaatttgggaaagtgatgaagctggacaacgacatcaaggctttagagagcaggaagaaa
caaatggaggcggacaaccaggagctggaggatacaatggaacaggtgtttcagggctca
gacgagcagctgcaggaaatgtatcagaaccaccagaggacggtgaaggagaaggaacgg
cggctcacagactgccagaaggagctggagagagctggccgagagtgcctgcgactaaac
cgagtcaaggctgatctcctggtagaacaaggtcgtcttcagctggaggctgaccggcac
actcaaaacatcaggaaccgtgacactcaggttcgctctttgtcatcctatctggaaatg
gagggatacgaccgaccgcccttcaccactcttcagcttgagagttttcaccgtcacacc
actcagagattggagcaggaaaaagagacagccagtcaggttttgacggacctgcaagaa
aaagagcagcagaagcaacagtccattgatgaaatgagggacaagaagactggcctggac
agaactgtggagctgaagagagacctgcaggcaaagaagcagcaggaactgaggaacatc
cgagcagagctgcagaggctggaggattcgtccactcgcctgcaagaactggagaatgaa
ttggctaaagcagagcgcgagctgcagagtgcagtgcagagttccaatgtcgaggagctc
aaggtcgaggttgtggagctccagagagaaaaggctgagcttgatcgtgcacagagaagg
ctcgaccaagaaatggagacactcaacacccacacctcaacacgcacgcaaatggagatg
ctgaaaaaagacaagacagaaaaggaggaccaggtgcgtaagatcaagtctcgtcacagc
gaggatctggtgtcgttgctgggtcactttcccaacaagaaggagctggaagactggatc
tatgccaagtcaaaggaaatcaacagcacaagggacagactcgccagactgaataaggac
ctggcatcaagtgagcagaataaaagccacattgcttctgagctgcgtaagaaggagcag
cagttgtccagcgatgaagagaagttcttcaacgtgtgtggcagtcaggatctggagcag
gacctgggcaaactgcaggatgatctggagaagatatccaaacaaagagccatgctagct
ggagccacagcggtgtacacacagttcatcagccagctgacagaggagagggagccctgc
tgtcctgtgtgccagcggactttcccatcagagcccgatctgcaggaggttatcagtgac
atgcagtccaaactacgcctggtgccagacaagctgaaaaacactgagcaggacctgaag
aggaaggagaggaagaaagatgagatgatgtctctcaggcctgtcaggcagtccatcgta
cagtttcgggagaaggagttgcctgagttgagaaaccgtctgcagactgtgaacagagaa
atcgagaggctgaagggagacttggaggagcaggagacgctacttggtaccctgatgtct
gaggaggaaactgccaaggcatgccttcaggacatatcgctcatggacagatacctgatt
gaccttaaagaggtggagaggaaaatagctcaacatggtgccaaactccagggtgtagac
ctgaccaggaccatccagcaagttagtcaggagaaacaagaaactcagcacaggctagac
accacctccagcaagatggagctgaaacgtaaactgatccaggaccagcaggatcagatt
cagatgctgaaaagttctgtgaatgaaacaagagcagtgaagctccagctgagcagcgat
atgcagaaacagcagcagctggaggagcagagtgtcgagttcaccaccgagataaaggac
ttgaccagggacatcagggaagcaaaggaacagctctcccctctgtctgctgctctagag
aagctgcagcaggaaaagcaggaactgatggagcgcaagaaacagagacaggaagaaggg
caggagaagatcaatgccattaaagacagagtgaaggtgatcaccaccttggaaagagac
atcaccaaatacgttgatgaaggcaaaaatgaatacaaagagcaaaaagagtctgaactt
caagaaaccaactctcagctgcatgatgctgagaagcaaaaagagaagatcagtaaggag
atgggaaacatccgtcaggacatagacactcaaaaggttaaggagcgctggctgcaggac
aacctgaccttgaggaagcgtgtggaggaattgaaagacgttgtggccaaacatgaggct
cttacgaaagacatgggcaacatgcaagtcatgcagctccgccaagaacgacatgaagca
gaacgcaaactggaagacctgaagaaaaaccgaagtattgcactgggacgccagaaaggc
tttgaggaggagatactgcattacaaaaaagagctgcgggaggatcagtacgacaaagct
gatgagcgctacaaaaacaagatgatcataatgaggaccacagagctggtcattaaagac
ctggatatctactacaaggccctcgatcaaacgatcatgaaattccacagcatgaagatg
gacgagatcaacaagattatcagagacctatggcgcagcacctacaggggtcaagatatc
gaatacgtggagatcaggtctgatgtggatgagaactcatctgctggagtgaagcggagg
gtttacaactacagagtagtgatggtgaaaggagacacagctttggacatgagaggacgc
tgcagtgctggtcaaaaggtgttggcgtccctgatcatccgtttagccttagcagagacc
ttttgtctaaactgtgggatcctggctctggatgaacccaccaccaacctggaccgggag
aacatcgagtcactggcacacgccctcgtagaaatcattaagagtcgctctcgccagcgt
aacttccagttgctgatcataacccacgacgaggactttgtggagctgctgggacggtcc
agctacattgaacacttctaccgcatccgtaagaaccaggaccagaactcggaaatcaca
aagtgcagcatcacgtccctctcatcgtatctccactga

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