Paralichthys olivaceus (Japanese flounder): 109636447
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Entry
109636447 CDS
T06037
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04140
Autophagy - animal
pov04142
Lysosome biogenesis
pov04148
Efferocytosis
pov05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
109636447 (vps39)
04140 Autophagy - animal
109636447 (vps39)
04148 Efferocytosis
109636447 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109636447 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pov04131
]
109636447 (vps39)
Membrane trafficking [BR:
pov04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109636447 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Lgl_C
Motif
Other DBs
NCBI-GeneID:
109636447
NCBI-ProteinID:
XP_019953727
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MHDAYEPVSILEKLPLQIDCLAAWEDCLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQTSSGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFAAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVEYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLREGFTELAIPYLEHIIYVWD
EKGPEFHNVLIQLYLERVQVLMKEYLNSLPEGVPAVAAGKEKGRLGEFRNKLLSFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDIRMAEEYCHSHYNSSVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSGPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEERAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRTVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtacgaaccggtgtcgattctggaaaagctcccgctccagattgactgt
cttgcggcctgggaggactgcctgcttgtgggtacaaaaccagggcatctgcttctctac
cggataaagaaggatgcaggtaccaatcggttcgaggtgacgctggaaaaatccaataag
aacttctcaaagaagattcagcagctttatgttgtctcgcagtacaaaatccttgtcagt
cttcttgagaacaacatccatgttcatgacctcctgacgttccagcagatcactgtagtg
tccaaagccaaaggagctacactctttgcctgtgatctgcagcaaaccagctccggggag
gaaaggttgagaatgtgtgttgcggtaaaaaagaagctccagctgtattactggaaggat
agagagttccatgagctgcagggcgactttgctgcaccagatatcccaaagtccatggct
tggtgtgaaaactccatatgtgttggcttcaagcgagactattaccttattcggatggat
ggtcgtggctccatcaaggagctcttcccgactgggaaacagttagagcctctggttgca
ccactggctgatgggaaggtggctgtcgggcaggatgacctcactgttgtcctaaatgaa
gagggtgtttgcacccagaagtgtgccctgaactggacagacatccctatagcgatggag
caccagcctccgtacatcatcgccgttctccctcggtacgtggagatccggacctttgag
ccgaggcttctggtgcagagcgtggagctgcagagacctcgcttcatcacctcagcaggg
caaaatattgtgtatgttgccagcaaccactttgtgtggcgcctggtgcctgtgtccata
gcgagccagatccggcagcttctccaggacaagcagtttgagctggctcttcagctggcg
aagatgaaggatgattcagacggtgataagaagcagcagatacatcacatccaaaatctt
tacgccttcaatctgttttgccagaagagatttgatgactccatgcaggtgtttgccaaa
ctgggcacagatcccacacacgtgattggactgtacccggacctgctcccatcagactac
cgcaaacagctgcactatcccaacccactacccacactgtccggggcagagctggagaag
gctcacctcgctcttatcgattacctcacccagaaacgcagccacctggtgaaacagctg
aatgactctgacccttccacaacatctccactcatggagggaacaccgactattaaaagc
cgcaaaaaactcctgcagatcattgatactactctactgaagtgttacctacataccaac
gtggccctggtgtcccccctccttcgtctggagaacaaccactgccacatcgaggagagc
gagtacgttctcaagaaggcgcacaagtacagtgagctgatcattctttatgagaagaag
ggcctgcaccagaaagctctgcaggtgctgctcgaccagtccaccaaggccaactctccg
ctgaagggccacgagcgaacagtggagtacctccaaagactgggagtcgagaatctgggc
atcatctttgagttttctccctgggtgctgaagatctgtcctgaagacggtttgaagatt
ttcactgaggacctgacggaggtggagactttgccccgagacaaagtgcttaacttcctg
agagagggcttcacggagctcgccatcccatatctcgagcacatcatctacgtgtgggac
gagaagggcccggagtttcacaatgtgctgatccagctctacctggagagggttcaagtc
ctcatgaaagagtacctcaactcactgcctgaaggggtcccagctgttgctgcaggaaag
gagaaaggccgactgggggagttcaggaacaagctgctgtctttcctggatatttctacc
agctatgaaccagccaggctcatcagtgattttccctttgacggcctgctggaggagcga
gctctgcttctgggtcggatgggtaaacacgagcaggcgctcttcatctatgtgcacatc
ctgaaagacatccgcatggctgaagaatactgtcacagtcactacaacagttcagtggaa
ggaaataaagatgtttatctgtctctgctgcgaatgtacctgtccccccctgacgtccac
tgtctggggcccatcaagatggagctgtcggggcctcaggcgaatctccaggcggccctg
caggtcctggagctgcaccacagcaagctcaataccaccaaggccatcaatctgctccca
gcaaacactcagatcagagagatccgggttttcctggagagcgtcctggaggagagggcc
cagaggaaacgctgcaaccaggtgctgaagagtctcctgcaggccgagttcctcagggtg
caggaggagcgaatcttccaccagcaggttaaatgcgtcatcacggaggagaagacctgc
agagtttgcaaaaagaaaataggaaacagtgcattcgccaggtatcccaacggtgtggtg
gttcattacttctgctgcaaagaccgcaccgtgtgtcccactgagcagtaa
DBGET
integrated database retrieval system
