Paralichthys olivaceus (Japanese flounder): 109637858
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Entry
109637858 CDS
T06037
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03030
DNA replication
pov03410
Base excision repair
pov03420
Nucleotide excision repair
pov03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109637858 (rfc1)
03410 Base excision repair
109637858 (rfc1)
03420 Nucleotide excision repair
109637858 (rfc1)
03430 Mismatch repair
109637858 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pov03032
]
109637858 (rfc1)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109637858 (rfc1)
DNA replication proteins [BR:
pov03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109637858 (rfc1)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109637858 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
Rad17
AAA_5
AAA_17
RuvB_N
AAA_14
BRCT_2
AAA_33
AAA_16
AAA_18
AAA_7
nSTAND3
NTPase_1
AAA_19
Nexin_C
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
109637858
NCBI-ProteinID:
XP_019956050
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MDIRRFFAPTASKPAVHKPTPNGNTDAEEKKKKNNKKSKPLSPDDEVKQKKKESNKGKSP
KTEKHLPCVSKDGEKKRKKHAVIESDSEEEPVRKSKKSPKEKQKSSKAAPPPKKDPVQYV
SETDSDSDNFQSLKKVSQTKHDDTSKLRKTEAESARPGTKEAAKPPVKSSTTQAKTGLKS
PPVLVSPKSPPQTKQTPTSVLDYFGSSTIQRSEKKLVASTKRKAPIQDTDDLISDEEIAR
QLQMSEDMELEKQVHEDEEFAKTLAMLEEEPQAKKARKGSDDKQAAFPKKSCTDSAAGST
SSPPARIKSEDVISPSPKKNLSPVKASSKLAMMKKRNEENSIGSKSKTLISPTKIKTSPK
KEPIASSSSHMKFTPKTGTTPTALKTSPKKPESTSTSPDDAEKKKVNSSSYRNYLNRDGP
RALGSKEIPMGAENCLEGCVFVLTGVLESMERDDTKSLIERYGGKVTGNVSKKTTYLVQG
RDSGVSKLDKAESFGTKILDEDALLELIRTKPGKKSKYEIAAEAENKASKTRTPPSQTSK
RTPKAQKISPSKGNSRSPHTPSPSKTSQAQGHGSRTRGGGTPPGRGSGHTARRELGLSSS
STTAEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWHKNHSGAVSKPPVRFGK
FGGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAES
LNNTSIESFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIRGSKIPIICMCND
RNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSITFKEGIKIPPPALNEIILASNQDVRQV
IHNLSMWSAKDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLF
FHDYSLAPLFVQENYLHVRPAAASGDLKSHLVLLSKTADSISDGDLVDRRIRSGQNWSLL
PTQAIYASVLPGELMRGYMSHFPTFPSWLGKNSSTSKHSRIVQELASHMCLKTFSSRQAV
NLDYLHYLRQALLSPLQRNGAEGASQAVQLLDDYHLMKEDVDSIMEISIWGGQPDPYSRL
ESKVKAAFTRAYNKEVHLTPYSLQIVKKGRRGGGESELGGEDMDNERQESEEEGEGLKAD
AMIKQKKAKVTKESKEKKEDSGKGKGKGKGKGKAKK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggaggttctttgcaccgactgcatcgaagcctgcggtgcacaaaccgacc
ccaaatggaaacacggacgctgaagagaagaagaagaagaataataagaagagcaaacca
ctgtctccagatgatgaagtgaagcagaaaaagaaagagagcaacaagggcaaaagccca
aaaacagaaaaacaccttccctgcgtttccaaggatggtgagaaaaaacgaaagaaacat
gctgtcatagagtcagactcggaggaggagccagtcaggaagtcaaagaaatcccccaaa
gagaaacagaagagcagcaaagcagccccgcctcctaaaaaagatcctgtgcaatatgtc
tctgaaacagactcagacagtgacaactttcagtccttgaagaaggtttcccaaaccaag
catgacgacacgtccaaactgaggaagaccgaggcagaaagtgctcgtccggggaccaaa
gaggcggcgaaacctcctgtcaagtcgtccactacacaggcgaaaactgggctcaagtct
cctccagtgcttgtatcccccaagtcgcctcctcagaccaaacaaacccccacctcagtg
ctcgactacttcggcagcagcactattcagcgctcagagaagaagctggtagccagcact
aaacgaaaggctccaattcaggacacagatgatctgatcagtgatgaggagattgccaga
cagctgcagatgagtgaggacatggagctggaaaagcaggtccatgaggatgaagagttt
gccaaaacactggccatgctggaggaggagccacaggccaagaaggctcgtaaaggctct
gatgacaaacaagctgcatttcccaaaaagagctgcacagactctgctgctggcagcacg
agcagtccgccggccaggatcaagtcggaggacgtgatcagtccgtctcctaagaagaac
ctttcccctgtcaaagccagctccaaactggccatgatgaagaaaagaaatgaagaaaac
agcatagggtcgaagagtaagacccttatttcacccacaaaaattaaaacctctcccaag
aaggagcccatcgcttcatcgagctcacacatgaagttcacacccaaaaccggaacgaca
cccactgcacttaaaacgtctcccaagaaaccagagagcacaagcacgagtcctgacgac
gcagagaagaagaaagtcaactcgtcatcttacaggaactacctcaacagagatggaccg
cgagctctgggctccaaggaaatcccaatgggagcagagaactgtttggagggctgtgtg
tttgtgttgacgggggttcttgagtctatggagagagacgacaccaaatccctcatcgag
cgctacggaggcaaggtgacgggcaacgtgagcaaaaagaccacctacctggtgcagggc
agggacagcggagtctccaaactcgacaaggccgagagttttggaaccaagatcctggat
gaggacgctctgctggagctgatcagaaccaaaccagggaagaagtccaagtatgagatt
gctgcagaggcagagaacaaagcttctaaaaccaggactcctcccagccaaacgtcaaag
agaacccctaaagctcagaagatctctccttcaaagggtaattccaggtcccctcacacc
ccgagcccgtcaaagaccagccaggcacaaggtcacgggagcaggactagaggtggtggc
actccacctggcagaggctcaggtcacacggcccggcgggagctgggcctttcctcctca
tccacaactgcagaggacgccagcctgctgtgggtggacaagtaccgcccgcgctctctg
aagactgtgattggccagcagggggatcagagctgcgccaataagctgctgcggtggctg
cagaactggcacaaaaaccacagtggcgccgtttccaagcctccagtaaggtttggcaag
tttggcggaggcaaagatgatggatcaggatttaaagctgctctgctctctggacctccg
ggggtggggaagaccaccactgctgcgctcgtctgtgaagagttgggcttcagctacgtg
gagatgaacgccagctgtactcgcagcaagaacagcctgaaggaggtcgtcgcagagtca
ctgaacaacacaagcatcgagagcttctacaaaggtacgtctcaaacagtgagcagtaaa
catgtcctgatcatggatgaggttgacggcatggctggtaatgaagaccgtggaggaatc
caggagatgatcggcctgatcagaggctcaaagattcctatcatctgcatgtgcaatgat
cgtaaccatcagaagatcaggtcactggctaactactgcttcgatctgcgcttccagagg
ccgcggctggaacagattaagggagccatgatgtccatcactttcaaagagggaatcaag
atccctcctccagctctcaacgaaatcatcctggcttctaatcaggacgtccggcaggtg
attcacaacctgagcatgtggtccgctaaagacaaggtgatgacgtacgaccagtgcaag
tctgatgcagccagcgcccgcaaggacatgaagctggggccgtttgacgtttgcaggaag
gtgtttgcctcaggcgaagagaccgcccacatgagcctcatcgacaagtccgacctcttc
ttccacgactattcgctagctccgctcttcgtccaagagaactacctgcacgtccgtcca
gcggctgccagcggagatctgaagtcccacctggtgctgctcagcaagacggcggattcc
atctcagacggagatctggtggacagacggatacgctctgggcagaactggtctctgctg
ccgacgcaggccatctatgccagtgtgttaccaggtgaactgatgagaggctacatgagt
cacttccccacatttcccagctggctcggcaagaactcctccaccagtaaacattcccgt
atcgttcaggagctggcctcacacatgtgtttaaagacatttagcagcagacaggcggtg
aacctggactacctgcactacctgcggcaggcgctgctgagcccactccagaggaacgga
gctgagggcgccagtcaggccgtgcagctgctggacgactaccacctcatgaaagaggac
gttgacagcatcatggagatcagcatctggggcggacaacctgacccctactccagactg
gagtcaaaggtgaaggcagctttcacacgcgcctacaacaaagaagttcatctgacgccg
tactcgctgcaaattgtgaagaagggtcgccgtggtggtggagagtcagagctgggggga
gaggacatggacaatgaacgccaagagtccgaggaggaaggggagggcctgaaggccgat
gctatgatcaaacagaagaaggcaaaggtcaccaaggagtcgaaggagaagaaagaagat
tctggaaaggggaaaggaaaaggcaaggggaaaggcaaagctaagaaataa
DBGET
integrated database retrieval system
