Paralichthys olivaceus (Japanese flounder): 109638836
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Entry
109638836 CDS
T06037
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03015
mRNA surveillance pathway
pov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109638836
09123 Folding, sorting and degradation
03018 RNA degradation
109638836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109638836
03041 Spliceosome [BR:
pov03041
]
109638836
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109638836
mRNA cycle factors
Stress granule specific factors
109638836
Spliceosome [BR:
pov03041
]
Complex C
Other components
Complex C specific factors
109638836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_10
RRM_7
RBD_RDR6
RRM_3
RRM_occluded
HTH_58
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
109638836
NCBI-ProteinID:
XP_019957559
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGDDMDEESLRELFSKYGNAMSIRVMTDDSGKSRGFGFVSFER
HEDAQKAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPAAGQMAQLRPSPRWTTQGVRPQHFQNMPGAMRPSAPRPQSFSTMRPASQVPRMMST
QRVAQSMGPRPASAAAAAAAPVRGVPQYKYAAGVRNPQQHMNAQQQVAMQQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVDEAVAVLQAHQAKEAAQKTVTNSAGVPSV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagtgctcccagttaccccatggcctcgctttacgtcggggatctgcatcaa
gatgtgaccgaggccatgctgtacgagaaattcagccccgccggagccatcctctcgatc
cgggtctgcagggacatgatcacccggcgctcgctcggttacgcgtatgtgaacttccag
cagccagcggatgcggagcgtgccttggacacaatgaacttcgatgtgatcaaggggcgg
cctgtgcgcatcatgtggtcgcagcgtgatccatcattgagaaaaagtggcgtgggaaac
atcttcatcaagaatctcgacaagtccattgacaacaaggctttatatgacaccttctct
gcttttggcaacatcctgtcatgcaaggtggtttgtgatgagaatggctctaaaggctac
ggctttgtgcattttgagactcaggaggcagccgaacgagccattgagaaaatgaatggc
atgctgctcaatgaccgaaaagtattcgtcgggcgcttcaaatctcgcaaagaacgcgag
gctgagctgggtgccagagccaaggaatttacaaacgtctacataaaaaactttggtgat
gatatggatgaggagagcctgagggagctcttcagtaaatatggaaatgccatgagtatc
cgcgtcatgactgatgacagtggaaagtctcgaggctttgggttcgtcagctttgagagg
cacgaggacgcccagaaagcagtggatgagatgaacggcaaggagatgaatggaaaactg
atctatgtcggccgagcccagaagaaggtcgagcggcagactgagctgaagcgcaagttt
gagcaaatgaaacaagatcgcatgactcgctaccagggtgtcaacttgtacgtgaagaac
cttgatgatggacttgatgatgaacgccttcgaaaggagttctcgccatttggcaccata
accagtgcaaaggtgatgatggagggtgggcgcagcaaaggcttcggctttgtctgcttc
tcgtctccagaggaggccaccaaagctgtgactgaaatgaatggacgcattgtagccacc
aagccgttgtacgtggccctggcccagcggaaagaggagcgtcaagcccacctgaccaac
cagtacatgcagcgcatggccagcgtgcgggctgttccaaacccagtcatcaatccttac
cagcccgctccaccctctgggtacttcatggcagccatacctcagacccagaaccgtgcc
gcttactacccagctgctggtcagatggcccagctgcgaccgagcccacgctggaccacc
caaggagtccggccacagcacttccagaacatgccaggtgccatgcgtccctcagcccca
cggcctcagtccttcagtaccatgcggcctgcgtctcaggtgcctcgcatgatgtccacc
cagcgtgttgctcagtctatggggcccagaccagcctctgcagcagctgcagctgccgct
ccggtgcgtggagtccctcagtacaaatatgctgcaggagtccgaaatccccagcagcac
atgaatgctcagcaacaagtcgccatgcagcagcctgctgtccacgttcagggacaggag
cctctgactgcctccatgctggccgctgctccaccacaggaacagaagcagatgctgggt
gagcgtcttttcccactgatccagaacatgcatcccagcctggccgggaagatcactggc
atgctgctggagattgataactccgagctgctccacatgctggagtctccagagtctctc
cgctcgaaggtggatgaggctgtggctgtgcttcaggcccaccaggccaaggaagctgcc
cagaagactgtgacaaattcagctggtgttccaagtgtctga
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integrated database retrieval system
