KEGG   Paralichthys olivaceus (Japanese flounder): 109639141
Entry
109639141         CDS       T06037                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pov  Paralichthys olivaceus (Japanese flounder)
Pathway
pov03030  DNA replication
pov03410  Base excision repair
pov03420  Nucleotide excision repair
pov03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pov00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109639141 (lig1)
   03410 Base excision repair
    109639141 (lig1)
   03420 Nucleotide excision repair
    109639141 (lig1)
   03430 Mismatch repair
    109639141 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pov03032]
    109639141 (lig1)
   03400 DNA repair and recombination proteins [BR:pov03400]
    109639141 (lig1)
Enzymes [BR:pov01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109639141 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     109639141 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     109639141 (lig1)
DNA replication proteins [BR:pov03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    109639141 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     109639141 (lig1)
DNA repair and recombination proteins [BR:pov03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     109639141 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     109639141 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     109639141 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N PH_PLEKHM2
Other DBs
NCBI-GeneID: 109639141
NCBI-ProteinID: XP_019958001
LinkDB
Position
Unknown
AA seq 949 aa
MQRSIASFFQPKSKDKDVQKKSTDPPVKKPVKSPLKVQNGAPDADSPIKKVAKRSRQILD
SDEDEAPVVKERVAVKGQGDKESSDKTEKKDDVFKAVPTPLSPPPAPATPVTPATPATPA
SSASPGTPGTPNSTSPSGIVKRKTARKMFPKRKLDESKSGSESQKDEAEAEEERGQLNKR
PRMEPVANSAGDAGDPMEEGAKEEDVEKAVTATNSQDEEVENKKKEDGEKAKEERRADRE
SCGEREKKAEGAEKKNEAKEETDDEKGSATAKKEVVEKDTREGEESPKSQTAKEQKDKEP
AKKAPISSFFAPRKVAVKTEKAEKNEGEKKTSAERKSSAEESKDTKSESTSGQSDYDPSR
PKYHPVDHACWKQGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPGKWCFI
SPIMHADVATRAAGCQPLYQGDDDEARSHIKAMNKKIDIIKGLFVACRFAEARYIVRSLA
GKLRIGLAEQSVLSALSLAVCLTPPGQDFPPAVIDAGKGMSTESRRAWIEEKSLILKQTY
CEMPNYDILIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVLKRFDEAAFTCEY
KYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSEAVAWDR
EKKLIQPFQVLTTRKRKDVDASEIKVQVCVYAFDILYLNGESLVRQPLCRRRALLKESFS
EVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKK
DYLEGVGDTMDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSICKIGTGFKDEDLEQ
HYKFLKDHILPKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDPVKG
ISLRFPRFLHIRDDKKPEDATSGAQVRHFTCTETSRRSFQFQFCSLIHF
NT seq 2850 nt   +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttctttcagcccaagagcaaagacaaggatgttcagaag
aagtccacggatccaccagtgaagaaacctgtcaagagccctctcaaggtgcagaacggc
gcgccagacgctgattcccccatcaagaaggttgccaagcgcagccgtcaaatcctggac
agcgacgaggacgaggcgcccgtcgttaaagagcgagttgccgtcaagggacaaggagac
aaagaatcctccgataaaacagaaaagaaggacgatgtgttcaaggcagtccccacccct
ctgtctccacccccagccccagccacccctgtaacaccagccactccagcaaccccggcc
tcgtcagcttcaccggggacccccggcacaccgaactccacctctccgtctgggattgtt
aaacgtaagacagcgagaaagatgttccccaagaggaagctcgacgagagcaagagcggc
agcgagagtcagaaagacgaggccgaggcagaggaggagcggggtcagctaaataaacga
ccccgcatggagcccgtcgccaacagtgcaggggacgccggtgaccccatggaggaggga
gcaaaggaagaagacgttgaaaaggcagtgaccgcgactaacagccaggatgaagaggtg
gagaacaagaagaaagaggacggagagaaggccaaagaggagaggcgagcggacagagag
agctgcggtgagagagaaaagaaagctgagggggcggaaaagaaaaatgaagcaaaggag
gagaccgatgatgagaaaggttctgccactgccaagaaggaggtggttgaaaaggacacg
cgagagggagaagagagcccaaaaagtcaaacagcaaaagagcagaaagataaggagccg
gccaagaaagctcccatcagcagtttctttgctcccaggaaagttgcagtgaagacggag
aaagcagagaagaatgaaggagagaaaaagacgagtgcagagaggaagagctcagccgag
gagagtaaagacacaaagagtgagtcaacttcgggacaaagcgactacgatccgtccagg
cccaaatatcatcctgtggaccacgcctgttggaagcagggccagagagtgccgtacttg
gctgtggctcgcacctttgagaagattgaagaggactctggcaggctgagaaacatcgag
acactgtcaaacctgctccgctctgtgctgctgctctctccaggtaaatggtgttttatc
tctcccataatgcatgctgatgtagctacacgggcagctggctgccagccactctatcaa
ggagacgatgatgaagccaggtcgcacataaaagccatgaataagaaaatcgacatcatc
aaaggcctctttgtggcatgccgcttcgccgaggcccgctacatagtcaggtccctggct
gggaagctgaggataggcctggctgagcagagtgtcctatcagcactcagtctggctgtg
tgcttgaccccacctggacaagatttccctcccgctgtgatcgatgccgggaaggggatg
agcactgagagcaggcgggcctggatcgaagagaagagtctcattctcaaacagacttat
tgtgagatgcccaattacgacatcctcatccccgttctcctgaaagagggcatagaccag
ctacccaatcactgcaagctcactccaggtgtaccgctgaggcccatgttggctcacccc
acaaagggcgttggcgaggtgctgaagaggtttgacgaggcggcgttcacctgcgagtac
aagtacgacggcgagcgtgcacagattcacattctggagagcggcgaggtgcggattttc
agccgcaaccaggaagacaacaccagcaaataccctgatatcatctctcgcattcccaag
gtgaagaaggactctgtggtgtcctgcgtcctggactcggaggctgtcgcctgggaccgt
gaaaagaagctgatccagcccttccaggtcctcaccacccgtaaaagaaaggacgtggac
gcctcggagatcaaagtgcaagtgtgtgtgtacgcctttgacatcctctatctcaacggc
gagtccctggtgcgacagccgttgtgtcggcgtcgggctctgctgaaagaaagcttctca
gaggtggagggagaatttgtgttcgcccgatccatcgactccgacaacaccgacaccatc
gcggagttcctggagcagtctgttcgagattcctgtgagggcctgatggtgaagactctg
gagaaggatgccacctatgaaattgccaagcgctctcacaactggctcaagctgaagaag
gactacctggagggggtcggtgacacaatggacctgtgtgtgattggtgcctacctgggg
aaaggcaagaggacgggcacctacgggggcttcctgctggcgtgctacgacgaggagaac
gaggagttccagtctatctgcaagatcggcacaggtttcaaggatgaagatctggagcaa
cattacaagttcttaaaggaccacattctgcccaaacctcgtgcctactaccgcttcgac
caatcagcggagcccgacgtgtggctcgacgccgtgcaggtctgggaggtgaagtgcgcc
gacctgtcgctgtcgcccgtctacaaggccgccatgggactggtggatccggtgaagggc
atttctctgcggttccctcgcttccttcacatcagagacgacaaaaaaccagaggacgcc
acatctggagctcaggtacgtcacttcacctgcactgagacgagtcggagatcgtttcaa
ttccagttttgctcattaattcacttttaa

DBGET integrated database retrieval system