Paralichthys olivaceus (Japanese flounder): 109639181
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Entry
109639181 CDS
T06037
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109639181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109639181
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109639181
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109639181
mRNA degradation factors
3'-5' decay
Ski complex
109639181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
109639181
NCBI-ProteinID:
XP_019958073
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MDRTNVPPAGPMDLPLSLLEMGCSGRFELITHPLPGQPLPPHSTLPHGLPPTNLNLETEV
EKQFLRDPAWLPIHDTDFAFQKFLKVTQRESNVDSLLKCAQSSLHSGLSVVRDPTTGMLQ
DFTEVLLENTGLSAKNSLSFQRQPGPPSESLRGSNTNYPFLPGGMEGLTLDQIKKKSELE
EDIDFENDLLRVPPGLKAGMDFTDKDAKKAKPEVNLMSLLSTFDDIVDLQPEAEEKTEGK
GVEEAPKLPRTNSLEDLGIKEAESSSTPSEKGKDDKSKPKEKPEENKKWAIPVNITSPCE
DFHKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHHLYTGNSTKTQKEMFLLVDAVGNFLTKGYYAAIDAKKERTSKHAQ
SFGTKNTSQNTSSSQDRAVWLTLLHYLSQRQQTPVVAFTFSRSRCDDNARSLDSMDMTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMGDLHVMMLGKPTILQSQFRLTYTMILNLLRVEALRVTDMMRRSFSENH
RDTQSQEKRISQLKQTLSSLPPLDTEGQLSDLMPYYHTVTELRTTTEALQRAILESVNGL
KALSVGRVVVVNNKQHRNALGVLLQVSNNSVNRTFTALIICEKGNEEGEGKGNHDSTLPH
LYNTALFIPEGPCSHTVQKLKFQDISSITVKTLKVMPDRIIDNYSKRQQPRFRHDPPGQA
ISTATQELLRLAEANPGGLVTLDPVNDLQLKSVNVVEDSMRLRVLQGSLKDFNCIHTPTF
AEQFARVTERMSVQEELDRLLFLASDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLIFTQNTQVEPHITNTLQEGIGRVLS
VAKRIGELQRECGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaaccaatgtgccccccgcgggccccatggacctgccgctgtccctgctggag
atgggatgctccggcaggtttgagctcatcacacaccccctccccgggcagcctctgcct
ccacacagcacgctccctcatgggcttccccccaccaacctgaacctggagacagaagta
gaaaaacagtttttacgggaccctgcatggcttcctatacacgacacggactttgccttc
cagaagtttctgaaggtgactcagagagagtctaacgttgattctctactcaagtgcgcc
cagtcttcgcttcactctggtctctctgttgtcagagatccaaccacagggatgctgcag
gacttcacagaggttttactggagaacaccggcctctcagcaaaaaactcactgtcattt
caacggcaacccgggcctccgtcagagagcctgcgaggaagcaacaccaactaccccttc
cttcccggaggaatggaggggctgacactggaccaaatcaagaagaaatctgagctggag
gaggacattgactttgaaaatgatttgctcagagttccaccaggtcttaaagctgggatg
gacttcactgacaaagatgccaaaaaggcaaagccagaggtcaacctcatgtccctcctg
tccacatttgatgacattgttgacttacaacctgaggcggaggagaagacggaaggcaaa
ggagttgaagaagctcctaaactacccagaacaaacagtcttgaagacctaggcatcaag
gaggctgagtcatcctccactccctccgagaaaggaaaagatgacaaatcaaagccaaaa
gagaagccggaggaaaataagaaatgggccatccctgtcaacatcacttcaccttgtgaa
gatttccataaacgcatccccaacccagcattcaagtggccgttcgaactggacgttttc
cagaagcaggctgtgctcaggctggaagctcacgactctgtgtttgtagctgcacacacg
tcagctggaaaaacagtggtggccgagtacgccatcgctctctcccagaaacacatgaca
aggaccatctacacgtctcctattaaagctctatccaatcagaagttcagagactttaaa
accacctttggagacgtcggactcctgacgggtgacgtccagctcagtcctgaatcctca
tgtctcatcatgaccactgagatcctcaggtcgatgctttacaacggctcagaggtcatc
agagacctggagtgggtgatcttcgacgaggttcactacatcaacgacgccgagagaggg
gtcgtgtgggaggaggttttgattatgctgcctgatcacgtcagtatcattctcctcagc
gccacggtgccaaatgctctcgagtttagcgagtggattggtcgtattaagaagagacat
atttacgtgatcagcacaatgaagagacctgtgcctctggagcatcatctgtacacagga
aacagcaccaagactcagaaagagatgttcctgttggttgatgctgttggaaacttcctc
accaaagggtactatgcagccattgatgccaagaaggagcgaaccagcaaacacgcccaa
tcattcggcacaaaaaatacttctcaaaacacttcgtccagtcaggaccgagcggtgtgg
ctcaccctcctgcactacttgtcccagcggcagcagaccccggtagtggcgttcaccttc
tctcggtcgcgctgtgacgataacgcccgctctctggactccatggacatgaccacgtcc
atagagaaggcagagattcactcttttttccagaagagcctgagtcgcctgcggggggga
gaccgacagctgcctcagatcttgctcatgagggacctgttgaagagaggaatagcagtg
catcacagcgggatcctgccgatactgaaggaggtcattgagatgctcttctcacgaggg
ctcgtaaaagtgctgtttgccactgagacatttgcaatgggagtgaatatgcccgccagg
accgtggtgttcgacagcatcagaaaacacgacggcaccggcttcaggaatctgctgcca
ggtgagtatattcagatggcgggccgagccgggaggagaggactggacgccacgggcacc
gtcattattctgtgtaaagctggtgttcatgagatgggagacctgcatgtcatgatgctg
ggtaaacctactatcctccagtctcagttcagattgacctacactatgatcctcaacctg
ctgcgagtggaggcgctccgagtgactgacatgatgaggaggagcttctctgaaaaccac
agagacactcagagccaagagaaaaggatcagccagctgaagcagacgctgtcctctctg
cctcctctggacacagagggccagctctccgacctcatgccttactaccacacagtgacg
gagctgcgaaccaccaccgaagccctccaacgagctattctggagtctgtgaacggtctg
aaagctctgtctgtgggtcgagttgtggtggttaacaacaaacagcaccgtaacgcgctc
ggagttctcctacaggtgtccaacaactctgtgaatcgcaccttcacagctctcatcatc
tgtgagaaaggcaacgaggaaggagaaggaaaaggcaaccacgacagcactttaccgcac
ctctacaacacagctctctttatacctgaaggtccgtgcagccacacggtgcagaagctg
aagtttcaggacatttcatccatcacagtgaaaaccctcaaagtgatgcccgacaggatc
atcgacaactacagcaagaggcaacaaccacgattcagacacgacccccccggccaagcc
atctccacggcaactcaggagctcctgcgtttggccgaggccaaccccggcgggttggtg
acccttgaccccgttaacgacctccagctgaagagcgtcaatgtggtggaggactccatg
aggctgcgcgtgctgcaggggagcctcaaagatttcaactgcatccacacgcccacgttc
gcggagcagtttgctcgggttacagagaggatgagtgtgcaggaggagctggaccggctg
ctgttcctggcgtcagaccagtctttgtctctgctgcctgaataccaccagaggatcaag
gtgcttcagtccctccagtacgtcgacagcagcggggcagtgcagctgaaaggccgcgtg
gcttgtcagatcagcagccacgagttgctgctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcctgaagagagcgccgccctgctgtcctgtctgatcttcacacagaac
acgcaggtggagccgcacattaccaacacgctgcaggagggaatcggtcgggtgctgtca
gtggccaagcgtatcggagagctgcagagggaatgtgggataccacagacggccgaggag
tttgtaggccagttcaagtttggtctgacagaggtggtgtactgctgggccagaggcatg
ccgttcgcagaaatcgccctgctcacagacgtccaggagggcacggtggtccgctgcatc
cagcgcctggatgaggtgctgaaggaggtgcgacaggccgcccgcatcgtgggagactct
gtcctggggagcaagatggagaaggcgtcgctggccatccgcagggacatcgtgttcacc
gcctcgctctacacccactga
DBGET
integrated database retrieval system
