KEGG   Paralichthys olivaceus (Japanese flounder): 109639522
Entry
109639522         CDS       T06037                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
pov  Paralichthys olivaceus (Japanese flounder)
Pathway
pov03013  Nucleocytoplasmic transport
pov03015  mRNA surveillance pathway
pov03040  Spliceosome
pov05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pov00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109639522 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    109639522 (alyref)
   03015 mRNA surveillance pathway
    109639522 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109639522 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pov03019]
    109639522 (alyref)
   03041 Spliceosome [BR:pov03041]
    109639522 (alyref)
Messenger RNA biogenesis [BR:pov03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     109639522 (alyref)
    TREX complex
     109639522 (alyref)
Spliceosome [BR:pov03041]
 Complex C
  Other components
   EJC/TREX
    109639522 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109639522 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 109639522
NCBI-ProteinID: XP_019958585
LinkDB
Position
Unknown
AA seq 275 aa
MADKMDMSLDDIIKQNRQQRGGGGGRGGGRGRGRGGSGGGRGGAGRVGMSGGGGGFGGRG
GGSGPMRSRQNLSRARGRPTPYNRPKQLPDKWQHDMFDNGFSGFNGAAGGGGGAGVETGG
KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQY
NGIPLDGRPMNIQLVTSQIDTQRRPVQGLSRGGGGGMNRNRGGSFGGMQRGRGGRGAGGA
RGRGRGGRGGNTKQQLSAEELDAQLDAYNARMDTS
NT seq 828 nt   +upstreamnt  +downstreamnt
atggccgataagatggatatgtctctagacgacattatcaagcagaacaggcagcaaaga
ggaggaggaggaggccgcggcggcggaagaggccgaggccgcggaggctccggcggcggc
cgaggaggcgctggacgcgttggaatgagcggcggcggaggaggatttggaggccgaggc
ggtggatccggccccatgaggagccgacagaacctgagccgcgctagaggcagaccaacg
ccttacaacaggcctaaacagcttccagataagtggcagcacgacatgttcgacaatggc
ttcagcggcttcaatggtgctgctggaggtggcggcggagctggagtggaaactggaggg
aagctcctcgtctccaatctcgactttggcgtctcagatgcagacatccaggaactcttt
gctgaatttggaactctgaaaaaggctgcggttcattatgatcgatcggggagaagtctg
ggaacggcagatgtccattttgaaaggagggcggacgcactcaaggccatgaaacagtac
aatggcatcccgctcgatggacggcctatgaacatccaactcgtcacatcacagatcgac
acacagagacgacctgtccagggtctgagcagaggaggcggcggtggcatgaacagaaat
cgagggggcagcttcgggggcatgcagagaggtcggggaggacgtggtgcaggtggtgcc
agaggaaggggccgaggaggacgtggtggcaacactaagcagcagctgtcagcagaggaa
ctcgatgcccaattagacgcctacaatgccaggatggacaccagctaa

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