Paralichthys olivaceus (Japanese flounder): 109640031
Help
Entry
109640031 CDS
T06037
Symbol
nxf1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03008
Ribosome biogenesis in eukaryotes
pov03013
Nucleocytoplasmic transport
pov03015
mRNA surveillance pathway
pov05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109640031 (nxf1)
03015 mRNA surveillance pathway
109640031 (nxf1)
03008 Ribosome biogenesis in eukaryotes
109640031 (nxf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109640031 (nxf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109640031 (nxf1)
03009 Ribosome biogenesis [BR:
pov03009
]
109640031 (nxf1)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109640031 (nxf1)
mRNA cycle factors
Stress granule specific factors
109640031 (nxf1)
Ribosome biogenesis [BR:
pov03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
109640031 (nxf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
109640031
NCBI-ProteinID:
XP_019959410
LinkDB
All DBs
Position
Unknown
AA seq
666 aa
AA seq
DB search
MNHWSLFRRDYPNLVVTRALTADHGNLMARDVRRADLMVEEEHDDRTAPQFRNRKGRGAH
KGRSYDRSRRDRQRGGHQGGFGGPGPRSRLEDTDGDVTMGEGSQDNGSQHRFNPYGKPFR
KGEGRFDRDRRQGRGGGGRGGGFRGGDRGGGSGNGGGGKNQSGWSKVTIPHGRKYDKKWL
LTALQNICSIPFTAVQYHVDHDRAHFYVDDPSASIALRKCSHKITDTDGYKVEVHVNSHS
PPSFLLADLKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDLVSHKVEVTLNRKTHMEA
VITIIEENIPELTCLNLSNNRIHKLDELSELVSKVPNLKTLNLSHNELKSDRELDKVKGL
KLVELWLNRNPLCLYFKDQASYISAVRQRFPRLLKLDGHDLPPPIGFDVETPTTIPPCKG
SCFGTDEIKALILRFLQQYYSIYDSGDRQPLLDAYHDGASLSMTTPYSTQNPSRSSLGEY
HKDTRNLKRIKDSTMRFRLLKHTRLNVVAFINELPKTQHDIASFTVDVNTYTNTLLSFTV
SGVFKEVAVDGKSRDSTMAFSRVFITVPAGGSGLCIVNDQLFIRMATTEEIRRAFVAPAP
TPSSSPVPTLTAPQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKADGHIP
DVAFIK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaccactggagcttgtttcggagagattaccccaacctggtggtgacacgtgctttg
actgccgaccatgggaacttaatggcgagagatgtcaggagagctgatctcatggtcgaa
gaagagcacgatgatagaactgcaccacaatttcgtaatcgcaaaggccgaggcgctcac
aagggacggtcgtatgacagatctcgcagagaccgccagcggggaggccatcagggtggc
tttggaggtccaggaccacggtctaggcttgaagacactgatggagatgtaactatgggt
gaaggctctcaagacaacggctcccaacacagattcaacccatatgggaaacctttccga
aaaggagaaggacgatttgacagagacaggcgacaagggagaggaggaggtggtagaggt
ggtggcttcagaggaggagaccgaggcggaggaagcggcaatggaggaggaggaaagaac
cagtcaggctggtctaaagtaacaataccacatgggagaaaatatgacaagaaatggtta
ctgaccgctcttcagaacatttgttcaattcccttcacagctgtacagtaccatgtggac
catgacagagcccatttctacgtggatgatccctctgcttctatcgctttacgcaaatgt
tctcacaagatcacagacacagatggttataaggttgaggtacacgtaaactcccactct
ccaccatccttcctcctcgctgacctgaagcctgaacacttagagcacctgaagcaatgt
atggcaaaacgttttgatggctcccagcaagcacttgacctgaataacatccgcacagac
ccagacctggtgtcccacaaagttgaagtcaccttgaatcggaagacacacatggaagct
gtcattaccattattgaagaaaacattccagagctgacttgcttgaacctgagcaacaac
cgtatccacaaactggatgaactctctgaattggtttccaaggtgcctaatctgaagacg
ctcaacctttcccacaacgagctcaagtctgatcgggagctggacaaggtgaaaggcctg
aagctggtggagctgtggctgaacaggaaccctctgtgtctgtacttcaaggaccaggcc
tcatacatcagtgctgtgcggcagaggtttcctcggcttctcaaactggatggtcatgat
ctccccccacccattggatttgatgtggaaacacccaccaccatcccaccgtgcaagggc
agctgttttggaactgatgaaatcaaggctctcattcttcgctttctacaacagtactac
agcatatacgactctggggacagacagccgcttcttgatgcttaccatgatggagcatcg
ttatccatgacaactccttattctacccagaacccctccaggagcagtctgggagaatat
cacaaagacactcgaaacctgaaaaggatcaaagattcaactatgaggtttcgactactg
aagcacacgcggctgaacgtggttgctttcatcaacgagttgcccaaaactcagcacgac
atcgcctcctttactgtcgatgtaaacacttacacaaacacgctgctgtcattcactgtg
agtggtgtcttcaaagaagttgctgttgacggtaaatcccgagactctaccatggccttc
tctcgagttttcatcacagtcccagcagggggttctggtttgtgcatcgtgaacgaccag
ctttttatccgaatggccacaacagaggagatccgccgcgcctttgtagctcccgcccca
actccttcttccagccctgttcccaccctcaccgcaccgcagcaggagatgctcactgcc
ttctcacagaagtctggcatgaacctggaatggtcccaaaagtgtctgcaagacaacgaa
tgggatttcaacagagcggcacaaatcttcactcagttaaaggcggatggccatattcct
gatgttgcattcattaaatga
DBGET
integrated database retrieval system
