Paralichthys olivaceus (Japanese flounder): 109640113
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Entry
109640113 CDS
T06037
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03440
Homologous recombination
pov03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109640113 (brip1)
03460 Fanconi anemia pathway
109640113 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pov03400
]
109640113 (brip1)
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109640113 (brip1)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
109640113 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
109640113 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ARCH_RTEL1
Motif
Other DBs
NCBI-GeneID:
109640113
NCBI-ProteinID:
XP_019959499
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MAKSRVEYTIGGVKIHFPCKAYPSQLAMMNSIVRGLNYGHHCLLESPTGSGKSLALLCSA
LGWQQAQFAKLHEGGSPAEVKKQSDKNPEAFKKPDVKTHCQCACHSKAGRVAAAGEVKPA
VVDLTVSPHKDQSITQQLSPTPERSLLQEESQSIASRLSEKVKSSLSTEGNKDDDFQPDR
KRMRAAELQSRKRKRLEQGVIFIDDEPEQENQPPGPSWATEPSSPLTGLPSSCTGKSCSY
YHGVQRMRDQYTLQHVHGLHEAWDIEDLVALGKRLRSCSYYAARELRQGASIIFCPYNYL
LDPMIRESMEIDLAGQILVLDEAHNIEDCARESASFTLDLNSLLTSRDELDSMVKNKIRS
SKHEPLRDFCFTLSNWIQESQSLMSERGYETASKVWSGKNVLDIFDTLGITAGTFALLKT
NLAAVLEKEEIIGFVNGKEDTVPIPIISSASSAVLKNLFMVLDFMFRDNCRFAEDYRVAL
QRSYSWTNQVPADVPDAQGFFVRPRYRQRQSVRVKKEVLTLSFWCLNPAVAFSDLSGSVH
CIVLTSGTLSPMSSFSSELGVKFSIQLEANHVINKSQVWVGTVGAGPQGRKLCATFQHTE
TYSFQDEVGALLLHVCQVMAKGVLCFLPSYKMLDKLRDRWTNTGLWEKMEQQKTVITEPR
GGGKEDFDELLQTYYDAIKFCDGGGQTDGALLIAVCRGKVSEGLDFTDDNARAVVTIGIP
FPNIKDLQVELKMKYNDQHRSRGLLPGNRWYEIQAYRALNQALGRCIRHRNDWGALILVD
DRYKNNPNKYITGLSKWVRQLVQHHDTFSNAMQSLVEFSQVQQKVEAAPADSQTVCSTAS
PPNCCSPATVEGQEPLRAALPQTPHSCVKLPESSPATFRPFSCEKLKTEQNEKAERLKTT
HSFPAESLAPRRKAKSLYHIFTSSPVSTRFKRAIFKEKPPSNVSQHLEVPNHSDHKENQE
ISSPQKNTEVPPCLEQAAADTSSEVKAEPLSLALGPSTGAVPPSCESEADDPAEEETDED
QTIFFTPELFEDEEDEGNTKETGTESPAGVGSGPGNSPLLSEELFSSEQAQGQASAFDGQ
GAISVSKERTELSQGRAEETRGQKQGEEGEKVGNLSRQACGKLRRLSRSRHKVPATPTGN
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagtcccgagtggagtacaccatcggaggggtgaagatccacttcccctgcaag
gcctacccatcccagctggccatgatgaactcaatcgtccgagggctgaactatgggcat
cactgtttgctggagagtcccacaggaagtggaaaaagcttagccttgctctgctctgct
ctgggctggcagcaggctcagtttgctaaactgcacgaaggaggaagcccagcggaagtg
aagaagcagtcagataaaaaccctgaagcctttaagaagccagacgtcaagacccactgt
cagtgtgcgtgccacagcaaagctggacgggtggcggctgcaggagaagtcaaacctgct
gtcgtggacctcactgtgtcaccacataaagaccaaagcatcacacagcagctgtctccg
acacctgaacgttcgctgttacaagaggagtcacaatccatagcctctcgcctgtctgag
aaggtcaagtcttccctgagcaccgaaggcaacaaagacgacgacttccagccggacagg
aaacgcatgcgggctgctgagctccagagccggaagaggaagcgtctggagcagggagtg
atattcatcgatgatgagccggagcaagaaaaccaacctccgggtccgagttgggccaca
gagccaagcagccccctgaccggtttaccctcatcatgcactggtaagtcgtgcagctat
taccatggtgtccagaggatgcgggaccagtacactctgcaacatgtccacgggctgcat
gaagcctgggacatcgaggacctggtggcactgggcaaacggctccgctcatgctcttac
tatgctgcccgtgaactcaggcagggtgcctccatcatcttctgcccatataactacctg
ctggacccaatgatcagagagagtatggagatcgacctggcaggccagatcttggtgctg
gatgaagcccacaacattgaagactgtgcaagggagagtgccagcttcacgttagacctc
aacagtctgctgacgtccagggatgagctggacagcatggtcaaaaacaaaatcagatcc
tccaaacacgaacccctcagagacttctgcttcactctatccaactggatccaggagagt
caaagcctgatgagtgaaagaggatatgagactgcaagtaaagtctggagtgggaagaat
gtactggacatctttgacacgctgggtatcactgcagggacctttgctcttctgaagaca
aacctggcagccgtgctggagaaggaggagattattggtttcgtgaatggtaaagaggac
acggtgccaatcccaatcatcagctcagcttcctccgctgtcctcaaaaacctcttcatg
gtcctggatttcatgtttagggacaactgcaggtttgctgaagactaccgggtagccctg
cagaggagctactcttggaccaatcaggttccggccgatgttcctgatgcccagggtttt
tttgtacgaccacgctacagacaacgccagagtgtccgtgtcaagaaggaagtgttgaca
ctcagcttctggtgcctcaacccagctgtggctttctctgacttgagtgggtcggtgcac
tgcattgtgctgacatcaggaaccctgtcgcccatgagctccttctcctctgaacttggg
gtgaaattctccatccagctggaagccaatcatgttatcaacaagtcccaggtttgggtg
ggcactgttggtgcaggaccccaaggcagaaaactctgtgccaccttccaacacactgaa
acatattcgttccaggacgaggtgggggccctgctgctccatgtgtgccaggtcatggcc
aagggtgtgctctgcttcctgccttcttacaagatgttggacaagctgcgggaccggtgg
accaacactggtctctgggagaagatggaacaacagaaaactgtgatcactgagccccgc
ggtggtggcaaggaggattttgacgaactgcttcagacctactacgatgccattaagttc
tgtgacggaggaggtcaaactgatggtgcgttgctgattgctgtgtgtaggggtaaagtg
agcgaaggactggacttcacagacgacaacgccagggcagtggtcaccatcggaattccc
ttcccaaacatcaaagacctccaggttgaactgaagatgaagtacaatgaccagcacagg
tccagaggtctccttccagggaatcgctggtacgagattcaggcctacagagctctcaac
caggccctgggaaggtgtattcgccacaggaatgactggggcgccctaattctcgtggac
gaccgttacaagaacaatcctaataaatacatcacaggtctgtctaaatgggttcgccag
ctcgtgcagcatcatgacaccttcagcaatgctatgcagtctctggtagaattctctcag
gtgcagcagaaagtggaggcagcccctgcagacagccagaccgtgtgctccacggcctca
cctccaaactgttgctctccggcaactgtagagggacaggagccgctcagggccgcacta
cctcagacaccccactcatgtgtcaaactgcctgaatcaagccccgccaccttccgtccg
ttttcatgtgaaaagctgaaaactgaacaaaatgaaaaagcagaacggttgaagactacg
cacagtttcccagcagagtcgctcgcacccagaagaaaggctaagtctctctaccacatt
ttcacctccagccccgtcagcacccgcttcaagagggccatttttaaagagaagccaccc
agtaatgtcagccagcacctggaggtacctaatcattctgatcacaaggagaaccaggag
atctcctctccacagaagaacactgaagtgcctccttgtcttgaacaagcggctgcagac
acttccagtgaagtcaaagcggaaccactcagtctggctctcgggccgtctacaggagca
gtccctcccagctgtgaaagtgaggcagatgatccagctgaagaagaaacagatgaggac
cagaccatcttctttactccagaactttttgaggatgaagaagacgagggcaacacaaag
gagacggggacggagtcgcctgccggggtgggttcggggccagggaactctcccctgctg
tcagaagaactttttagctctgagcaggcccaagggcaagcctctgcttttgatggacag
ggtgctatttcagtcagtaaggagcgcacagagctgtcacagggacgtgcagaagaaacc
aggggacagaaacaaggtgaggagggagagaaggtgggtaacctaagcaggcaggcatgc
ggtaagctccgcaggctgtccaggtccagacacaaggtccctgccaccccaacaggtaac
taa
DBGET
integrated database retrieval system
