Paralichthys olivaceus (Japanese flounder): 109640141
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Entry
109640141 CDS
T06037
Symbol
ercc2
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03022
Basal transcription factors
pov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109640141 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
109640141 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pov03021
]
109640141 (ercc2)
03036 Chromosome and associated proteins [BR:
pov03036
]
109640141 (ercc2)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109640141 (ercc2)
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109640141 (ercc2)
Transcription machinery [BR:
pov03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109640141 (ercc2)
Chromosome and associated proteins [BR:
pov03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109640141 (ercc2)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109640141 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SesA
UxuA
Motif
Other DBs
NCBI-GeneID:
109640141
NCBI-ProteinID:
XP_019959545
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGESNNFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSDPGLPACRFYEEFDAVGRQVPLPAGVYNLDDL
KEFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID
NVCIDSMSVNITRRMLDRCQNNVDTLQNTIQKIKETDTAKLREEYRRLVEGLKEANVARE
TDVYLANPVLPDEILKEAIPGTIRTAEHFVGFLRRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLQSEEMLQKISQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgagggtctgctggtgtattttccatatgactacatttatccggag
cagtactcctacatgctggagctgaagaggactctggacgctaagggtcatggagtcttg
gagatgccgtcaggaacagggaagacaatctctctgctgtcactcatcgttgcctaccaa
agagcctttcctttggaagtgaccaaactcatttactgctccagaacagtcccagagatc
gagaaggtggtggaggagctgaggaaactgatggagttttattctaaagaaactggagaa
agcaacaacttcctggctctggctctttcctccaggaaaaacctctgcatccaccctgag
gtgagctctctgcgcttcggtaaggaggttgatgggaagtgccacagtctgacggcatcg
tacattcgtgctcagcgtcacagcgaccccggcctgcccgcctgtcgattctatgaggag
tttgatgcggtcggcagacaggtgcctcttccagctggcgtctacaacctggacgacctg
aaggagtttggcaggaggaaaggctggtgtccgtattatctggcgcgctactcaatcctg
cacgccaacattgtagtgtacagctaccactatctgctggaccctaagatcgctgacctg
gtgtccaaagaactctccaagaaatctgtggtggtgtttgatgaggctcataatattgac
aacgtatgtatcgactccatgagtgtgaacatcaccagacgaatgcttgaccgctgccag
aacaacgtggacactctccagaacaccatacaaaagatcaaggagacggacacggccaag
ctcagggaggagtacaggcggctggtggaggggctgaaggaagccaatgttgcccgggaa
acagacgtctacctcgctaatccagtgttaccagatgaaattctcaaagaggcaattcct
ggaaccattcgcacagctgagcactttgttggttttttgaggcgcttcctggagtacctg
aagtctcgtctgagggtccagcatgtcgtacaggagagcgccccacagttcctcaaagac
atctttgacaaagtctgcatcgaccgtaaacctcttaggttttgtgcagagcggttgcaa
tcattattacgaactctggagattgcagacattgcagacttctcagctgtcactctcatc
tctaactttgctaccctggtcagcacctacagccaaggttttaccatcatcattgagccc
tttgaggacagaactccgaccattgcaaaccctgttctgcacttcagctgcatggatcca
tcgatagccatcaaaccagtttttcaaaggtttcagtcagtcgtcatcacctcagggact
ctctctccactggacatctatccccgaatcctggacttccgccctgttactatggcgtcc
ttcaccatgacactagcacggacctgcctctgtcccctgattgttggaagaggaaatgac
caggtggccctgagctcaaagtttgagaccagagaagactttgctgtgattcgtaactat
ggcaacctacttcttgaaatgtcggccattgttcctgacggcattgtggcgtttttcacg
agctatatatatatggagaatatagtggcatcttggtatgaacagggaatccttgaaaac
atccagagaaacaaactcatcttcattgagactcaggatgctgcagagacgagcatggcc
ctggagaaataccaggaggcgtgtgagaacggcagaggagccatcctcctgtctgtggcc
agaggaaaagtgtctgagggaatcgattttgttcaccattttggtcgggcagtcatcatg
tttggagttccttatgtttacacacagagccgcatcctaaaggctcgtctggagtacctt
cgtgatcagtttcagatcagagagaacgacttcctaacgtttgatgccatgcgtcacgca
gctcaatgtgtgggcagagccatcagaggcaagaccgactacggactcatgattttcgct
gacaaacgttatgcccgagcagacaaacgtgggaaacttcctcgctggattcaggagcac
attaacgacggcagtctgaacctcaccgtggacgaggccgtccagctctcaaagcacttt
ctacgtcagatggctcagcctttcagacaggaggaccagctgggtctgtctctgttgact
cttgagcagctgcagtcagaagagatgctgcagaaaatctctcagatcgctcatcagact
taa
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