Paralichthys olivaceus (Japanese flounder): 109640296
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Entry
109640296 CDS
T06037
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109640296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109640296
Enzymes [BR:
pov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109640296
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109640296
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109640296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
type_II_gspD_N0
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
109640296
NCBI-ProteinID:
XP_019959754
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MPKEKYDPPDPRRCYTIMSAEDAANGKKSYWAELEISGRVRSLSSSLWTLTHLTALHIND
NNLSRIPPDIAKLPNLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQVMP
TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEDITNCDADIISLQEVETEQ
YYTMFLETLKEHGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDVFSGGMKPPQEKQLILVANAHMHWDPEY
SDVKLIQTMMFLSELKSIAERASGSIATGSPTSDPSSIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFKELRYRECLTNFNCNGKNGNSDGSITHSFQLKSAYDNNLMPYTNYTYDFK
GVIDYIFFSKTHMSVLGLLGPLDSQWLVDNNITGCPHPHIPSDHFSLLAQLELHPPLPHP
HNPLNGLHLPVNR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgaccctccagatccccgcagatgttacaccatcatgtcagcc
gaggatgcagccaatgggaagaagtcttactgggctgagctggagatctctgggcgggtg
aggagtctgagcagctcgttgtggacgctcactcacctgacggcgctgcacatcaacgac
aacaacctgagccgcatcccgccggacatcgccaagctgcccaacctggtctacctgaac
ctgtcgtccaataagctccggagcctgcccgccgaactgggcaacatggtctctctcagg
gaattgcttttaaacaacaatcttttgcgagttctgccttatgaacttgggaggcttttc
cagttacaaaccctggggctgaaaggaaatcctttgtcccaagatatcctcaatctgtac
caggagccggacggaaccagaaagcttttgaactacatgctcgacaatctagcggtgcac
ccggagcagctcccccaaagaccttggatcacgctgaaagagcgagaccaagtgatgccc
acagccgtgttcacggtcatgtgctacaacgtgctgtgtgacaagtacgccacgcggcag
ctgtacggctactgtccgtcctgggccctcaactgggagtaccggaagaaaggcatcatg
gaggacatcaccaactgtgacgctgacatcatcagtctgcaggaggtggagacagagcag
tactacaccatgtttctggaaacgctaaaggagcacggctacgacggctacttctgtcca
aagtctcgtgccaaactggtttctgaacaggagaggaaacacgtggacggctgcgctgtg
ttcttcaagactgagaagtttacgttggtccagaaacacactgtggagttcaaccaggtg
gccatggccaactccgagggctccgaggtcatgctgaacagagtgatgaccaaagacaac
atcggcgtggccgttctgctcgaggttaacaaggacgtgttctccggcggcatgaagcca
ccacaggagaagcagttgattctggtggccaacgcccacatgcactgggaccccgagtac
tcggacgttaagttgattcaaaccatgatgttcctgtcggagctgaagagcatcgctgag
agggcctcgggctccatagcgaccggctcgcccacgtccgacccgtcctccatccccatc
gtcctgtgtgctgacctcaactcgctgcccgactctggggtggttgaatacctgagcaac
ggaggggtggccgagaaccacaaggacttcaaggagctacgctacagggaatgtctgacc
aacttcaactgcaacggcaagaacggcaactcagacggaagcatcactcacagctttcag
ctgaagagcgcctacgacaacaatctgatgccttacaccaactacacatatgacttcaag
ggcgtgattgactacatcttcttctcgaagacccacatgagcgtcctcggcctgctggga
ccgctggacagccagtggctcgtcgacaacaacatcaccggctgcccccacccccacatc
ccctcggaccacttctccctgctggcccagctggagctgcacccccccctgccccatccg
cacaaccccctcaacgggctgcacctgccggtcaacaggtag
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