Paralichthys olivaceus (Japanese flounder): 109640419
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Entry
109640419 CDS
T06037
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109640419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109640419
03036 Chromosome and associated proteins [BR:
pov03036
]
109640419
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109640419
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109640419
mRNA degradation factors
5'-3' decay
Decapping complex
109640419
Chromosome and associated proteins [BR:
pov03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109640419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
109640419
NCBI-ProteinID:
XP_019959974
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MATARTENLGTVVMGLNKQNGQLRGQTKSASVQPAPTTQGKSMGALQKAGCPPQEGGGIK
FGDDWKKSLKLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAMVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDILRLDEIVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTKRVELLAKKITQLGYSCFYIHAR
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRVNLKAIEEQLVTDIKPIPSSIDKSLYVAEYHSSSGDCDVEEIEE
KPGLQEDSI
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgccagaacagaaaaccttggcacagtcgtcatgggattgaacaagcagaac
gggcagctcagaggacagaccaaatcagcttcagtccagccagcacccacaactcaagga
aagtctatgggcgcactccagaaagcaggctgccccccgcaagaaggaggaggcatcaag
ttcggagacgactggaagaagagtctgaagctccctcccaaagacaccagggtccgaacc
tcagatgtgacatccaccaaggggaatgaatttgaagattactgtctcaaacgagaactc
ctgatgggcatctttgagatgggttgggagaaaccatcccccattcaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgagctaaaaatggaacagggaaaagt
ggagcctatctcatcccaatgctggagaggatagacctgaaaaaggactacatacaggcc
atggtcatggtgcccactcgtgagctggcactgcaggtgagtcagatctccatccagatc
agcaaacacctaggaggagtcaaagtcatggcgaccaccgggggcaccaacctgcgagat
gacatcttgcgcttggacgaaatcgtgcatgtggtcatcgccacccctggcaggatcctg
gacttgataaagaagggagtggcgaaggtggatagggtccagatgatggtgatggatgag
gcggataagctgctgtctcaggactttgtggtgctcattgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttccccatcagcgtgcaaaagttc
atggccaagcaccttcagaaaccctacgagataaacttgatggaggagctgactctgaag
ggcattactcagttctacgcctacgtcacagagaggcagaaagtccactgcctcaacaca
ctgttttccaggcttcagatcaaccagtctatcatcttctgtaactctactaagcgagtg
gagctgttggccaagaagatcactcagctgggctactcctgcttctacatccatgccagg
atgatgcaggaatacagaaaccgggtgttccatgacttcaggaacggactgtgcagaaac
cttgtctgcacagatcttttcaccagaggtatcgacatccaggctgtcaacgtcgtcatc
aacttcgactttcctaagaatgctgagacttacctccatcgtattggaagatcagggagg
tttggtcacctgggcttggccattaatctcatcacgtcggaggatcgcgtaaacctgaag
gccattgaagagcagctggtgaccgatatcaagcccattcccagcagcatcgacaagagc
ctctatgtggccgagtaccactcatccagcggcgactgtgacgtggaggaaatcgaggag
aagccaggactccaagaggacagcatctaa
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