Paralichthys olivaceus (Japanese flounder): 109640693
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Entry
109640693 CDS
T06037
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pov03000
]
109640693 (rc3h1)
04121 Ubiquitin system [BR:
pov04121
]
109640693 (rc3h1)
Transcription factors [BR:
pov03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109640693 (rc3h1)
Ubiquitin system [BR:
pov04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109640693 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
109640693
NCBI-ProteinID:
XP_019960386
LinkDB
All DBs
Position
Unknown
AA seq
1136 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSILSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPGSFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGPGGLMTDEVLPLDVAVTRKPS
PLPNGSVANSLPQLIARSTDAVPYEHLRKPMKIDGGIPSAPGSPPDVLDTVPKPGMPLPH
HVMSHPRMPADHLSGVKHMPVVPRGSPVYPQPQLPEMCYETRPPLSASQYDPPQYPTGYP
YQQPPQYVPRDYIRNPPPPSESGPPYQDPYPGYGPPERPYQALHSGQTFSYPHPQHFERG
RHGTYAGPPPPPQPYPLQRENPIRMSPAPHDVPPPSAGQPNSLYHQEPTARGRYPPDGYY
PPGAQAPTMRSYGRGPSYSGPQPSLDYLHRRRQELLSQLEERKVISPPPFAASPALSHPF
PSDYPPEYGEENSKTIVKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVSGTMEIMN
VEAKGLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTTKTGYQTAGPVQAMAS
APQNPNSKHMTMPAEYSYGSHGGWGGASYPSHQTASSSQGHFSERLPMAATDREQLKIEL
QQVNQQINQQTQMHSMETASNSLLLQREASALAGQPVQPCQSQSAAAAQQHQQAKWPAGG
ATAPAVSSEQLSMELDQVEREIGKRTREMAMENQVAHDVQQYKMKPSENGQPEHKTLEEI
SLALGEVSNGSSSLQESAVGGSMLSLSNKTSALSMCSDPGATGSEMQKNGVVHSCS
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacggagttcctgctgtgcccgatctgcacacagaca
tttgaggagactgttcgccggcccatcagcttgggttgtggacacactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagcacagat
atcgagcagctgcctgtcaacacagccctgttgcagctggttggaggccaggttcctaag
gctcaaccagttgccttgattaccagtccagaggactcgcagcattatgaggaggccagg
cagtgtgtggaggagctggccctttatctcaaacccctcagcaacacccgaggtgtgggt
ctgagcagcacggcccagagcatcctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggtggaagaggagggtcgtgtcagagccatgagagctgcccgctct
cttggtgagcgaactgtcaccgaactcatcttgcagcaccagaatccacagcagctctcc
tccaacctgtgggctgctgtccgtgcacgaggatgtcagtttctcggcccagcaatgcaa
gaggaagctctgaagttggttcttctggctttagaggatggttctgctctctccaggaag
gtgttagtgctctttgtagtccagaggcttgaaccacgcttcccacaggcctctaaaact
agtatagggcatgtggtgcaactcctctacagggcctcctgcttcaaggtgaccaaacgc
gatgaagattcatccctgatgcaactgaaagaggagttccgtacttacgaggctttgcgg
cgcgagcacgactctcagattgttcagattgccatggagggagggctgcgcattgcacct
gaccagtggtcctctctgttatatggagatcagtctcacaagtcacatatgcaatcgatt
atagataagcttcagacaccgggatcttttgctcagagtgtgcaggagctgacgattgcg
ctgcagaggactggtgacccagccaacctcaacaggctgcggccccaccttgaactactg
gccaacattgatcccagtcctgatgcccctcctcctacatgggagcaacttgacaagggg
ttggtagcagtgaagacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgatcctcaacagcctcctcagcacagcaaatacaagacatacatgtgtcgt
gacatgaagcagaaaggaggctgtccacgtggagccagctgcacctttgctcactctcag
gaagaactggagaagtatcgtaagatgaacaagcgtctggcagcacgtctcccgggccca
ggagggctcatgacagatgaggttctcccacttgatgtagcagtgacccggaagccttca
cccctccccaatggcagcgttgcaaactctttgccacagcttatcgctcgcagcactgac
gcagtcccatatgaacatttgcgtaaacctatgaagatcgatggagggattcccagtgca
cctggatcaccacctgatgttctggacactgtacccaaacctggtatgcctctgccacat
catgtcatgtcccacccaaggatgcctgcagaccatctctctggggtgaagcacatgcct
gtggtacctagaggttctccagtataccctcagccacagctccctgagatgtgctatgag
actcgcccaccactctctgcctctcagtatgatcccccgcagtaccccacagggtacccc
taccagcagccaccgcagtatgttcctcgggattacatccgtaaccctcctccccctagt
gagtcaggacccccttaccaagacccctaccctggctatggtcctccagagcgcccctac
caggcccttcactctggccaaaccttctcctaccctcaccctcaacactttgaacgaggt
cgccatggtacctacgccggcccaccacctcccccacagccttacccattgcagagggaa
aacccgatcagaatgagtcctgcacctcacgatgttcctccaccatcagctggacagcca
aattccctctaccaccaggagcccactgcccggggtagatacccaccagatggatactat
ccaccaggtgcccaggctccaaccatgaggtcttacggcaggggaccatcatatagtggt
ccacagcccagcctagactatctgcaccgacgtcgacaggagctgttatcccagctggag
gaaaggaaggtcatctcccctccaccgtttgctgcctctcccgcgctttctcatcccttc
cccagcgactaccctcctgagtatggtgaagagaattccaaaaccattgtgaaatgcaga
gagcctgactatgcagggcagtactctccctggtcttgtgaaaccattggctcctacatt
ggcactaaggatgccaaacccaaagatgttatggtttctggtaccatggagataatgaac
gtggaggctaagggtctgagggaaccatcgctagaggctcctcggaggggtgcagaagtc
aaggacgatgaccccatcatcccatttggtccccagcccactgtgtcacgttttggtgcc
atctcccgcaccacgaagacgggctaccaaaccgcgggccctgtgcaggctatggcctca
gctccccagaacccgaactctaaacatatgaccatgccagcagaatactcatatggaagc
catggaggatggggtggagcttcgtacccctcccaccagactgcctcctcctctcaggga
cacttcagtgagcgcctgcctatggcagccacagacagagagcagttaaaaatcgagctg
cagcaggtcaaccagcagatcaaccaacagacccagatgcacagcatggagactgccagt
aactctttactgctgcagagggaggccagtgcattggcaggtcagcctgtacagccctgc
cagagccagtctgcagcagcagctcagcagcaccaacaggccaagtggccagcaggggga
gcaactgcacctgctgtctccagtgaacagctaagcatggagctcgaccaggtggagagg
gagatcggcaaaagaacccgagaaatggctatggaaaaccaggtagcacatgatgttcag
cagtacaagatgaaaccttcagagaatggacaaccagagcacaagactctggaagaaatc
tccctggctcttggcgaggtgtcaaacggctccagcagtctgcaagaaagtgcagtaggc
gggtccatgctgtcactgagcaacaagacgtcagcgctgagcatgtgttctgacccaggt
gccacaggttcagagatgcagaagaatggcgtcgtccattcctgctcttag
DBGET
integrated database retrieval system
