Paralichthys olivaceus (Japanese flounder): 109640715
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Entry
109640715 CDS
T06037
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03013
Nucleocytoplasmic transport
pov03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109640715 (upf2)
03015 mRNA surveillance pathway
109640715 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109640715 (upf2)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109640715 (upf2)
mRNA cycle factors
P-body specific factors
109640715 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
109640715
NCBI-ProteinID:
XP_019960421
LinkDB
All DBs
Position
Unknown
AA seq
1297 aa
AA seq
DB search
MCTGSRVGSLVSVLMSVMPAERKRSVNMDEKDVCTFTNKEKEKDRDGERRPASARDKAKD
EAKMSGKKDGGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKRQQEEQE
RKLQEEEAKRQREEEAALLKEKEEGHQLHQEAWERHHCRKELRSKNQNAQEGRPEEAFFS
RLDSSLKKNTAFVKKLRTLTEQQRDSLSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCA
VHLCSLFHLRYSEFAPLLLQAWKKHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKE
GLSLIYEQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLMSRKVKIAAEKFGLSFPPSE
IINTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEF
ATSYQKLLANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDE
DARNFYENMVDLKAFVPAILFKDNEKSNQGKEKDDAKDGKEGKDTTSTTEELELELEALD
ITDEPLELEGADEVENEELTKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLI
DKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSML
KGDFRFHIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMAC
TLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTV
KKKRPPLHEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKRYLICCMVNIWNVKYNSI
HCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMV
ESAVIFRTLFSFIFFGVNPDGSPGLLDPPEHLFRFRLVCTLLDTCGQYFDRGSSKRKLDC
FLIYFQRYIWWKKSIDVWTRDHPFPIDIDYMISDTLELLRPKMRISCSLEEATKQVSDLE
REVLVKLGLGMEKDGRSSAMSEGEVLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDD
GSENEEEEREEEEEENTDYLTDSTKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDK
MMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGSTGQPCIAEGESDISDTMQFVMLTRK
GNKQQYKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQ
RPAQANTNRERRPRYQHPKGAPNADLIFKTGGRKNLV
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtgcactggcagtcgtgttggtagtttggtgtctgtcctgatgtcagttatgcctgct
gaacgtaagcgctcagtaaacatggatgaaaaagatgtttgcaccttcactaacaaggag
aaggagaaggacagagatggtgagaggcgaccggcgtctgcccgagacaaagcaaaagac
gaggccaaaatgagtggtaaaaaagatggtggcaaggaggagaagaggaagcggctagaa
gaggaaaagaagaagaaggaggagaaggagcgaagaaagaaagaggaggaaaaacagaaa
gctgaggaggaacagaagaagaaggaggaggaagagaagagacagcaggaggagcaggag
aggaaactccaagaggaggaggccaagagacaacgtgaggaggaggcggctctcctgaag
gaaaaggaggaggggcatcagctgcaccaggaggcctgggagcgccatcactgcagaaag
gaactccgcagcaagaaccaaaacgctcaagagggtcggcctgaagaggcctttttcagc
cgcctggactccagccttaaaaagaacacggccttcgtcaagaagcttcgcacacttacc
gaacagcagcgcgattcactctccaatgactttggctccctgaacctcagcaagtacatc
ggcgaggctgtgagctctgtcgtggaggccaagctgaagatctctgatgtcggctgcgct
gtccatctgtgttccctcttccacctgcgctactctgagtttgctccattgctgttacag
gcctggaagaagcacttcgaagcaaggaaggaggaaaaggcgcccaatgtgagcaagctg
cgcacagatctgcgctttattgcagagctcaccatcgtcggcctcttcacggacaaagag
ggtctgtcgctcatttatgagcagctgaagaacatcatcgggaccgaccgggagacgcac
actcatgtttcggtggtcatcagtttctgtaagcactgtggggatgacatcgctggtctg
atgtcccgcaaggtgaaaattgctgctgagaagttcggcttgtccttccctccaagcgag
ataatcaacacagagaagcagcagcccttccagaaccttctgcgtgagtacttcacgtca
ctcaccaaacacctgaagaaggaccaccgggagctgcagaacattgagaggcagaacagg
cgtatcctacattccaaaggggagctgagtgaggacaggcacaagcagtatgaagagttt
gccacttcctaccagaagctgctggccaacactcagtccctggctgacctcctcgatgag
aacatgccagatctgcctcaggacaagaccgtgcaggaggaacacggtcctggcattgat
atcttcacccctggtaagcctggagagtatgacctggaaggagggatctgggaagatgaa
gacgctcgtaacttctatgagaacatggtggacctgaaggccttcgtccctgccatcctc
ttcaaggacaacgagaagagcaaccagggcaaagaaaaagatgacgccaaagatgggaaa
gaagggaaggacacgaccagcactacagaggagctggagctggagctggaggctctggac
atcacagacgaacctcttgaactggagggagcagacgaggtggaaaatgaggagctgacc
aaaaaactgctggatgagcaagagcaagaggatgaggaggccaacacaggctcccacttg
aagcttattgtggacgccttcatccagcagctccccaactgtgtgaacagggacctcata
gataaggctgccatggacttctgcatgaacatgaacaccaagtctaacaggaggaaactt
gtccgagcccttttcactgtccccaggcagaggttggatctgctccccttctactctcgg
ctggtggcaactcttcacccctgcatgtcagatgtggctgaggacctctgctccatgttg
aagggagacttcaggtttcatatccggaagaaggatcagatcaacattgagacaaaaaat
aaaacggtcagatttatcggggaactggccaagttcaagatgttctcaaaaacggacacg
cttcattgtctcaagatgctgctgtctgacttcacccatcaccacatagagatggcctgc
actctgctggagacctgcggccgcttccttttcagatcccctgactctcacctgcgtacc
agcgtcctgctggagcaaatgatgcgcaaaaagcaggctcagcatctggatgcccgctac
gtgacgatggtggagaacgcctactactactgcaacccccctcccatggagaagacggtg
aagaagaagaggcccccgctgcacgagtacatccgcaagctcctctacaaggacctgtcc
aaggtcaccactgagaaggtgctgaggcagatgcgcaagctgccgtggcaggacccagag
gtgaagcggtacctgatctgctgcatggtcaacatctggaacgtcaagtacaacagcatc
cactgtgtggccaacctgctggccggcctggtggcctaccaggaggacgtggggattcat
gtggtggacggcgtcctggaggacatccgcctgggcatggaggtcaaccagcccaagttc
aaccagcggcgcatcagcagcgccaagttcctgggcgagctctacaactaccgcatggtg
gagtcggccgtcattttccgcaccctcttctccttcatcttcttcggggtgaatccggac
ggcagccccggcctcctggatcctccggagcacctgttccgcttccgtctggtctgcacc
ctgctcgatacgtgcggccagtacttcgaccgaggctcgagcaagaggaagctggactgt
ttcctcatctacttccagcggtacatctggtggaagaagagcatcgatgtttggacccgt
gaccacccgttccccatcgacatcgactacatgatcagcgacaccctggagctgctcagg
cccaagatgaggatcagctgctcgctggaggaggccaccaaacaggtcagcgacctggag
agggaggtgctcgtaaaactaggtctggggatggagaaggacggtcgctccagcgccatg
agcgaaggggaggtgctggacgaggaagacgacgacggcgacgacgacgaagagggaggc
gcagagaccgaggagcagtcgggcaacgagagtgaaatgaacgagcaggaggaggatgat
gggtccgagaacgaagaagaggagcgggaagaggaggaagaggagaacacagactaccta
accgactccactaaagaaaacgagactgatgaggagaacaatgaggtgaccatccgcggc
ggtggactgaagcacgtggcctgtgccgaggatgaggacttcattcaggctctggataag
atgatgctggagaacctgcagcagcgtagcggcgaggcggtgaaggtgcaccagctggac
gtggccattcctctgcagctgaagagtcagctgaagaagggcagcacgggacagccgtgc
atcgcagagggagagtcggacatctcggacaccatgcagttcgtgatgctgacacgcaag
ggcaacaagcagcagtataagatcctgaacgtgccgctgtcatcacacctggcggcgaac
cacttcaaccagcagcaggccgagcaggaggagcgcatgaggatgaagaaactcaccctg
gacatcaacgagagacaggagcaggaggactaccaggagatgatgcagtccctggcccag
cgtccggctcaggccaacaccaaccgggagcgtcggcctcgctaccagcacccgaaaggc
gctcccaacgccgacctcatcttcaagacaggaggaagaaagaatttggtgtga
DBGET
integrated database retrieval system
