Paralichthys olivaceus (Japanese flounder): 109640918
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Entry
109640918 CDS
T06037
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109640918 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pov03041
]
109640918 (sf3b1)
03036 Chromosome and associated proteins [BR:
pov03036
]
109640918 (sf3b1)
Spliceosome [BR:
pov03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109640918 (sf3b1)
Complex B
109640918 (sf3b1)
Complex C
U2 SnRNP specific factors
109640918 (sf3b1)
Chromosome and associated proteins [BR:
pov03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
109640918 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
109640918
NCBI-ProteinID:
XP_019960716
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGEQGVGLVSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKMQVRSYVDVMLEQNLSKEEREIRLQLAEKAKSG
DLKVVNGSAAAQAATKRKRRWDQTADQTPSNATPKKMSSWDQADTGAETPGHTPAHTPSS
TRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGNGWAVTPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNIFVRYELEYVL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatatcgaggcccagatcctggagatccagggg
atgaaggctacactgctggaggaaggagagcagggtgtcggcctcgtttccactggcttt
tttgaccaggagatttatggaggcagcgacagtcgcttcgctggatatgtcacttccatc
gctgcaaatgaacaggaggatgatgatgaagatgacacatcaacaagcttgttgggacag
aagaagccggggtaccatgcacctgtggcaatactcaatgccattccacagtcagatgag
caatacgaccccttcgcggagcatcgtccacaaaagatcgcagagcgtgaggacgagtac
aaagcccggcgcagacagatgatcatctccccggagcgtctcgacccttttgcagacggg
ggcaaaacaccggatcccaagatgcaggtcaggtcgtacgtggacgtcatgttggagcag
aacctgtccaaagaggagagagagattcgtctgcagctggcagagaaggccaagtcaggg
gacctgaaagttgttaacgggtcagctgccgcccaagcagccacaaaacgcaagcgtcgc
tgggaccagacagctgaccaaaccccctcgaatgctacacccaaaaagatgtccagctgg
gaccaggctgacaccggtgctgagactccaggacacacccctgcacacaccccctcaagc
acccgatgggatgaaacccctggccgacctaaaggcagcgagactccaggggccactccc
agcacccgtatgtgggaccccacgcccagccacacacctgccggtgctgccacccctggc
agggatacccccggccacgccacacctggccacggtggagccacgggtagcgttcgcaag
aaccgttgggacgaaaccccaaagacagaaagagagacccctggtcatggaaacggttgg
gctgtgaccccacgaacagacagaggagacgagtctgtgggcgagactccaaccccaggg
gccagtaagaggaagtccaggtgggatgaaacccctgccagtcagatgggatcctccaca
cctcttctcacccctggaaagactcccattggaacaccagctatgaacatggccacccca
acaccaggtcacctgatgagcatgactccagagcagctgcaggcgtggaggtgggagaga
gaaatcgatgaaagaaaccgtcctctcacagatgatgagctggatgccatgtttccagag
ggatacaaggtcttgcctccaccagcaggttacgtaccaattcgtactccggcccgcaag
ctgtcagccacacccacgcctattggaggcatgacaggtttccacatgcaggtggaggac
cgcaccacaaaacagatgaatgaccagccctcaggaaacctccccttcctcaaacctgat
gacatccagtattttgacaaattgctggtggaggtggacgagtccacgctgagccccgag
gagcagaaggaaaggaagatcatgaagcttctgctgaaaattaaaaatggaacaccaccc
atgaggaaggctgctctgcgtcagatcaccgataaggctcgtgagtttggagcgggcccg
ctgttcaaccagatcctgccactgctcatgtcgcccacgctggaggaccaggagcgccat
ctgctggttaaagtcattgaccgtattctctacaagctggatgacctggtccggccgtat
gtgcacaagatcctggtggtgatcgagccgctgctgattgatgaagattactacgccaga
gtagaaggcagagaaatcatctctaacttggcaaaggctgctggtttggcgacgatgatc
tccacgatgcgacctgatatcgacaacatggacgagtacgtcagaaacaccacggccaga
gccttcgctgtggtggcctctgctctcggtattccctctctgctgcccttcctcaaagct
gtgtgtaaaagcaagaagtcctggcaggctcgacacacgggcatcaagatcgtgcagcag
atcgccattcttatgggatgtgctatcctgccccacctccgcagcttggtggagattatt
gaacacggtctggtggatgagcagcagaaggtgaggaccatcagtgctctggccatagct
gctcttgctgaagctgctacaccctacggtatcgagtcattcgactccgtcctgaagccg
ctctggaagggtatcagacagcacagaggaaagggtctggctgctttcctcaaagctatt
ggctacctgatcccactgatggacgcagagtacgcaaactactacaccagagaggtgatg
ttgatcctcatcagagagttccagtcccctgacgaagagatgaaaaagatcgtactcaag
gtggtgaagcagtgttgtggcactgatggtgtggaagccaactacatcaagactgagatc
ctgcctccgtttttcaagcacttctggcagcacaggatggctctcgacagacgcaactac
agacagttggtggacaccacggtggagctggccaacaaagtgggagcagcagagatcata
tctcgcatcgtggacgacctgaaagacgaggctgagcagtacagaaaaatggtgatggag
actattgagaaaatcatgggcaaccttggcgccgctgacatcgaccacaagctggaggag
cagctgatcgacggcatcctgtatgccttccaggagcagacgacagaggactctgtgatg
ctgaacggcttcggcactgtggtgaacgcccttgggaagcgagtgaagccctaccttcct
cagatctgcggtacggtgctgtggcgtctgaacaacaagtcagccaaagtccgtcaacag
gccgctgacttgatctcccgtacggctgtggtcatgaagacctgtcaggaggagaagctg
atgggtcacttgggtgtggtgctgtacgagtacctgggagaggagtaccccgaggtgttg
ggtagcatcctgggagctctgaaggccattgtgaatgttattggtatgcacaagatgact
ccgccgatcaaagacctgctccctcgtctgactcccatcctgaagaacaggcacgagaag
gtgcaggagaactgcatcgacctggtgggcaggatcgctgacaggggtgctgagtacgtg
tcagccagggagtggatgaggatctgttttgaactgctggagctgctgaaggctcacaag
aaggccatccgcagagccactgtcaacacgttcggttatatcgccaaagccatcggtccc
cacgacgtcttggcgactctgctcaataacctgaaggtgcaggagcgtcagaacagagtc
tgcacgactgtggccattgccatcgtcgccgagacctgttcgcctttcacggtgctgcct
gcgctcatgaacgaataccgtgtgcccgagctcaacgtgcagaacggcgtgctcaagtcc
ctctccttcctgtttgagtacatcggagagatgggcaaagactacatctacgccgtcacg
ccactgctggaggacgcactcatggacagagacttggtccaccgacagacggcgagtgct
gtggtccagcacatgtctttgggcgtctacgggtttggctgtgaagattcgctcaaccac
ctgctcaattacgtgtggcccaatgtgtttgagacgtcacctcatgtgatccaggccgtc
atgggcgccctggaggggctgagggtcgccatcggtccctgccgcatgttgcagtactgc
ttacagggtttgttccatccagcgaggaaggtgagagacgtctactggaagatctacaac
tccatctacatcggctcacaagacgccctcattgcccactacccacaagtctacaacgac
gagaaaaacattttcgtccgctacgagctcgagtatgtcttgtaa
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integrated database retrieval system
