Paralichthys olivaceus (Japanese flounder): 109640934
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Entry
109640934 CDS
T06037
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109640934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109640934
03041 Spliceosome [BR:
pov03041
]
109640934
03036 Chromosome and associated proteins [BR:
pov03036
]
109640934
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109640934
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109640934
mRNA cycle factors
Common to processing body (P body) and stress granule
109640934
Spliceosome [BR:
pov03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109640934
Chromosome and associated proteins [BR:
pov03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109640934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
109640934
NCBI-ProteinID:
XP_019960737
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MSHVVIDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAPKNGNAYSAGRQCGY
SVAPVNLYSPGWDGGRSNGFVNGCHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFNQ
PLQNAGIGGYENKDGNWGGAPRDAAYNSFGGRTDRSKSTFFNERGAGSRGRYERGGFSSG
GNSRWAEESRDEDWSKPTAPNDRLEQELFSASNTGINFEKYDDIPVEATGANCPPHIESF
HDVELGEIIMGNINLSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQI
YTEGPGEALQAAKNNGQDNGRYSRRKQYPLSLVLAPTRELALQIYEEARKVAYRSRVRPC
VVYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNYMVLDEADRMLDMGFE
PQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQK
VVWVEETDKRSFLLDLLNATVIPSEVQESVTETPEKPGKDSLTLVFVETKKGADALEDFL
YHEGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSD
IEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHK
SSTRGRSKRFSGGFGARDYRQTPGGAGNFTSSRGGGRNPGGNRGFGGGGFGGNFYSNDGY
GGNYSHSGSVDWWGN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcatcgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgctgacggacaaggcggaggaaccggtcggcgttacattccacctcacctg
aggaacaaagatgctccaaaaaacggaaatgcttattccgctggtagacagtgcggttat
tcagtggcaccagtaaacctctattcacctgggtgggacggcggacggagcaatggattt
gtaaatggttgccacgacaaccgcacaaatgggggatttggaggccgcggaccccctcgc
aatgatagaggtgggcgcggcgcctaccgtggtaacaggggtggaggctcctttaatcaa
ccattgcaaaatgcaggaattggtggttatgaaaacaaagacggcaactggggcggagct
cccagagacgctgcctacaacagcttcgggggccgaactgataggtccaagtcgaccttc
ttcaatgaacgtggggccggctccagaggaagatatgagcgcggaggcttctcaagtgga
ggaaacagccgctgggcggaggagtccagagatgaggattggtcaaagcccactgctcct
aacgatcgcctggaacaggagcttttttctgcaagcaacactgggataaattttgagaaa
tatgatgatattcctgtggaggccactggggccaactgccctcctcatattgaaagtttc
catgatgtggaattgggggagattatcatggggaacatcaacctgagtcgctacactcgc
cccacccctgttcagaaatatgctatccccatcatcaagtccaaaagagacctgatggcc
tgcgcccagacaggctctggcaagactgctgccttcctgctgcccgtgctgagtcagatc
tacacggaaggaccaggagaggctctgcaggctgccaaaaacaatggacaggacaatgga
aggtacagccgccgtaaacagtacccgctctccctggtcctggctccgaccagagaactg
gctttgcagatctatgaggaggcgaggaaggttgcctatcggtctcgtgtgcgtccctgc
gtagtttacggtggagctgacatcggtcagcagatcagggaattggagagaggctgtcac
cttcttgtggccacacccggacgtctggtcgacatgatggagaggggcaagatcggtctg
gactactgcaactacatggtcctggacgaggctgaccgcatgttggacatgggttttgag
ccccagatcaggcgtattgtggaacaggatactatgccacctaaaggcattcgtcagacc
atgatgttcagtgccaccttccccaaggagatccagatcctggctcgtgacttcctggag
gactacattttcctggcagtgggccgtgttggttcaacctcagaaaacatcactcagaag
gtggtttgggtggaggaaacggacaagaggtccttcctccttgacctgctcaacgccaca
gttattcccagtgaggttcaggaaagtgtgacagagaccccagagaaaccgggaaaagac
tccttgactctggtgttcgtggaaaccaagaaaggagcagatgccttggaggactttctg
taccacgaaggttacgcctgcaccagtatccacggggatcgatcccagagagacagagag
gaggccctgcatcagttccggtctggacgctgccccatcttagtggccacagctgtggct
gctcgaggtctggacatctccaacgtgaagcatgtcattaactttgatttgcccagtgac
attgaggagtacgttcaccgtatcggccgtacgggacgtgtgggcaacctcggtctggcc
acgtcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacatcttggtg
gaggccaagcaggaggttccttcctggcttgagagtctcgcctacgagcaccagcacaag
agcagcacccgtggacgctccaagaggttctctggtggttttggagccagagattaccgt
cagacacccggtggtgctggaaacttcaccagcagccgtggaggaggaagaaaccctgga
ggaaaccgtggctttggggggggtggcttcggtggcaacttctacagcaatgacggctat
ggaggaaactacagccactctggtagtgtggattggtggggcaactag
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