Paralichthys olivaceus (Japanese flounder): 109641746
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Entry
109641746 CDS
T06037
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04510
Focal adhesion
pov04512
ECM-receptor interaction
pov04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109641746 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109641746 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109641746 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pov04147
]
109641746 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109641746 (col4a6)
Exosome [BR:
pov04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109641746 (col4a6)
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109641746 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109641746
NCBI-ProteinID:
XP_019961845
LinkDB
All DBs
Position
Unknown
AA seq
1655 aa
AA seq
DB search
MKHGRPGPLGDVGQSGPEGYRGSLGPSGPKGEKGHSGLKGPSGPKGDKGPMGVPGFQGTD
GVPGHPGLEGGRGSPGLDGCNGTRGDAGDPGYGTGSPGYPGPTGPSGPKGQKGEPRYISD
NGVSRYPGEPGPNGRPGLRGSDGQSGLPGPQGPEGYQGPPGPPGPPGLMGSRSDGYQGEK
GDKGDVGLPGPSGTPGDGSLRSEQTLTIYKGDKGEPGPKGVRGFSGNPGQPGPFGYQGEL
GEKGIPGYPGARGPPGFNGPPGAPGQLGYRGNQGFPGQPGYIGPKGDQGDPGPPGPPAYV
NDLGTSVQGQPGDPGFNGLPGAPGDQGSPGYPGQPGPPGPVLDPTGGGGSRGFPGILGPK
GEKGSGGIPGYGVEGLPGSPGFPGPVGPPGPPGPSSSPTTGPTSYPGQPGQPGPQGQPGD
TGYKGFRGDPGDCNCRGGFIPGGQGVRGPPGPNGNPGFNGRKGEPGDLGFPGFGGVQGPP
GRQGEPGVYGRKGEKGTSYYPNLGLGVKGELGATGPRGPTGETGKSGRDGLPGFPGQPGP
PGDAGFGTVGERGFPGFPGSKGRPGGPGEPGIGYVGTPGFRGEPGDPGISGLPGSPGSPG
QRGENSCGGVNDVGEGTGQLLPCKIPGEEGDPGYPGSPGRPGPKGQPGFAREPGRPGIDG
AKGERGDPGTGGQPGPQGFPGPRGDPGVPGIPGQGYDGARGKDGIPGRPGAKGQPGEVLG
ATPGVPGRDGSPGLPGDKGQPGTPGGPGSPGFDGRSGVPGRKGESGVNGLPGFPGPPGPP
GEPTGGLPGRPGAPGSKGLSGPPGCQGYPGRKGDRGDPGFSGPAGMKGTPGLPGTPGSPG
SRGPPGPPGPGTIAGVPGIPGRKGERGFQGLTGFPGLPGRPGSPGFPGGKGLPGGSGRDG
LPGGPGYSGQKGERGYPGPPGLPGEFGPSYFVEKGDPGNPGSNGLPGFPGPRGDKGLPGL
PGRQGLPGLPGYAEQSKGQPGQPGLPGQPGGPGYPGPKGEAGIMGFPGMSGARGEDGSPG
FPGNPGESGKPGDKGIPGDTFGYPGGPGSKGQPGDSGFPGGRGNNGAPGDNGFPGSPGFP
GAKGAPGEGGRPGIMGSPGFPGPKGLSSYPGRRGADGAPGLPGGPGGPGAKGLPGPPGLD
GLNGLAGPKGLPGTPGGIVGGIPGTPGIPGLKGERGVSYPGAPGYPGGKGERGEPGISGR
PGFPGRPGLPGESVGSNVPGPTGNPGLPGLDGEYGLQGPPGPPGPPGPGTAQGDRGDPGL
PGFPGSPGSKGEPGIPGGPGSPGFPGSKGARGDSGYTGGSGLKGFPGDPGYYGNKGAKGL
RGRVGRKGFPGVTVPPRDFRRPFGDMGFSGEGGSPGAPGESGQPGIPGRPGAKGPPGPVG
KLGRTGTNGLPGTVGDGGPPGFPGPTGEQGLPGTVGRPGIPGGVGRSSSIGYTLVKHSQD
SQVPMCPQGMAQLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEICYYA
SRNDKSYWLSTTAPIPMMPVAEQEIQRYISRCSVCEAPSQAVAVHSQDMNIPSCPPGWRS
LWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGGKGTCHYFANKYSFWLIT
VDPSQEFRYSPAQETLKGGQERSRVSRCQVCSKIL
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacggtcgtcctgggccccttggcgacgtgggtcagagcggaccagagggttac
cgcggcagcctggggccttcagggcctaaaggagagaagggccatagcggcctgaaggga
ccgtctggccccaaaggagacaaaggaccaatgggagtgcccgggttccagggaactgat
ggagttcctggtcaccctggtctggagggcggcagaggatcacctggtctggacggttgt
aacgggaccagaggagatgccggggaccccggctacgggaccggatcacctggataccct
ggacctactgggcccagtgggccaaagggccagaaaggagaacctcgatacatctcggac
aacggcgtctcaagatatccaggtgaaccaggacccaacggtcgacctggattacgaggt
tccgatggtcagtctggtttacctggcccacaaggacctgagggataccagggtcctcct
ggcccccccggccccccagggctgatggggagtcgcagcgacggatatcagggagaaaaa
ggagacaagggcgacgtgggtctccccggacccagcggcacccccggcgacgggtcgcta
agaagcgaacaaactctcactatctacaaaggagataagggggaaccaggacctaagggc
gtccgaggattcagcggtaaccccggtcaacctggacccttcggttatcaaggtgaactt
ggagagaagggcattcctggataccccggggcgagaggtcctcctggatttaacggcccc
cctggcgctccaggacaactgggatacaggggtaaccaaggtttccccgggcaaccggga
tacatcggacctaagggagaccagggagaccccggaccaccaggacctcccgcctacgtg
aatgacctgggcacctctgttcaaggacaaccaggtgacccaggtttcaacggcctgcct
ggcgcccccggtgaccagggatctcctggttatccaggacaaccagggccaccaggaccc
gtgctggaccccacaggtggtggtggctcccgaggtttccccggcatcctaggccccaag
ggagagaagggtagcgggggtataccaggctacggcgtggagggactcccaggctcccct
ggattccccggacccgtcggcccccccggacctccaggcccctcgagttcaccaacaact
ggccccaccagctaccctggacagcctgggcagcccggcccccaaggacaacctggtgac
actggttacaaaggcttcagaggggatcctggcgactgtaactgtagaggaggatttatt
cccgggggacaaggggtacgcggaccccccggacccaatggcaaccccggcttcaacgga
cgaaagggagaacctggtgacttgggatttcctggctttggtggcgttcagggacctcct
ggacgacaaggtgaaccgggtgtctatggccgtaagggagagaaggggacgtcttattac
cccaacctgggtttgggggtgaagggagaactcggagctaccgggcccagaggacccaca
ggtgaaactggaaaatctggcagagacggattacctggcttcccaggacaacccgggcct
ccgggcgacgctggcttcggcacagttggagagagaggtttcccgggattcccggggtct
aagggtcgtcccggaggccctggcgagcccggcatcggctacgtcggaaccccaggcttt
cgtggagagcctggagatcccggaatatctgggttaccagggtcacctggttcacctgga
cagagaggtgaaaacagctgtggaggggttaatgacgtcggagagggaacgggccaactg
ctgccttgcaaaatacctggtgaggaaggagatcccggttaccctggttcacctggacga
ccaggcccgaaaggtcaaccaggtttcgctagagaaccaggacgtcccggcattgacgga
gccaaaggagaaagaggagatcccggtactggaggtcaacctggaccacaaggtttccct
ggacccagaggggatcctggagttccaggtatcccaggacagggctatgacggagccagg
gggaaggatggcattcctgggcgtcctggagccaagggccagcctggagaggtactggga
gccacgcctggtgttccgggacgagacggttcaccgggacttcctggagacaagggccaa
cctgggacgccggggggacctggatcacctggttttgacggacgttcaggtgttcctgga
agaaagggagagagcggtgttaatggtcttcctggtttccctggcccccctggacctcca
ggtgagccgaccggtggcctccccggtcggcccggagctcctggcagcaagggactgagc
ggaccaccaggctgccaaggttatcccgggcgcaagggagacagaggagacccaggattc
tcagggcctgctggcatgaagggaaccccaggactgcctggcacccctggttctccaggg
tccaggggacccccaggacctccaggaccaggaactatagcgggagttcctgggatccca
ggaaggaagggtgagagaggttttcaaggactgacgggattccctggactaccagggcgc
cctggtagtccaggcttcccaggaggcaaaggactgcccggggggtctggaagagatgga
cttcctggtggacctggatactccggacagaaaggtgagcggggataccctggccccccc
ggcttgcccggagaattcggtccgtcatactttgtggagaaaggagaccccggaaaccct
ggaagcaacggacttcctggcttccccggacccagaggtgacaagggtctgccaggtcta
cctggtcgtcagggtctgcctggacttcctggttatgcggagcagagtaaaggacagcca
ggtcagcctgggctccccggacagcctggaggtccaggctaccctggaccgaagggagag
gctggaatcatgggattccctggcatgtctggagcaaggggtgaggatggttcaccaggt
ttccctggtaaccccggagaatctggtaaacctggagacaagggtatacccggagatact
tttggttatcccggaggtccaggttctaaaggtcagccaggagattcaggcttcccaggt
ggtcgtggtaacaacggcgctcccggtgacaatggctttccaggaagtccaggtttccct
ggagcaaagggagctcctggtgaaggaggacggcctggaataatgggctcccctggtttc
cccggaccaaagggtttgtcctcctacccaggacgaagaggagcagatggggcccctggt
ctgcctggaggtcctggaggacctggagccaaaggtttgcctggaccccctggtttggat
ggacttaacggccttgcaggacctaaaggcctccctggaactccaggtggaattgtagga
ggtattccaggtacccctggtattccagggctgaagggagagaggggcgtctcctaccca
ggtgctcccggctaccctggagggaagggagagagaggagagccaggtatttctggacgc
ccaggattccctggtcgaccaggacttcctggtgagagtgtggggtccaatgttcctgga
cctacgggaaatcccggactccctggactggatggagagtatggtctccagggtcctcca
ggtccacccgggccccctggtccaggcacagcacagggagacagaggtgaccctgggctg
ccaggcttccctggctcccccggcagtaaaggagaacctggaatccctgggggccccgga
agccccggtttccctggtagcaaaggagcacgaggtgacagtggttacaccggaggttct
ggtctaaaaggtttccctggtgaccctggttattatggaaacaaaggagccaagggattg
cgagggcgtgttggtcggaagggtttccccggagtcacggtgccaccgagagatttcagg
cgacccttcggagacatgggtttctcaggcgaaggcggaagccctggtgcccccggagag
tccggtcagcctggaatcccaggacgcccaggtgctaaaggtcctcctggccctgtgggt
aaactgggcaggaccggaactaatggtctgcctggaactgttggggatggcggaccacct
ggtttcccgggaccaactggagagcaaggtcttcccggtaccgtaggtcgccccggcatt
cctggcggagtcggccgcagctccagcatcggctacacgctggtgaagcacagccaggac
tcccaggtccccatgtgtcctcagggcatggcccagctgtgggaaggctacagcctgctg
tatgtggaggggcaggaaaaggcccacaaccaggatcttggtcagccgggctcgtgtctc
cccaggttcagcaccatccccttcctctactgctcccccaacgagatctgctactacgcc
agccgcaacgacaagtcatactggctctccacaaccgcgcccatacccatgatgcccgtg
gccgagcaggagatccaacgttatatcagcaggtgttcggtttgtgaggcgccgtctcag
gctgtggcggtccacagccaggacatgaacatccccagctgcccccccggctggaggagt
ctctggataggatactccttcctgatgcacacggcggcgggcgcagagggcggcggtcag
tccttggtgtctcccggctcttgtctggaggatttccgcgcaactccgttcatcgagtgc
aacggcggcaaaggcacctgccactacttcgccaacaagtacagcttctggctcatcacc
gttgatcccagccaggagttccgctactcgccggcacaggagaccctgaagggaggccag
gagcgctcccgagtcagccgctgccaagtctgcagcaagatcttgtag
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integrated database retrieval system
