Paralichthys olivaceus (Japanese flounder): 109642363
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Entry
109642363 CDS
T06037
Symbol
pan3
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109642363 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109642363 (pan3)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109642363 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
109642363 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
zf-CCCH_2
Pkinase
Motif
Other DBs
NCBI-GeneID:
109642363
NCBI-ProteinID:
XP_019962665
LinkDB
All DBs
Position
Unknown
AA seq
810 aa
AA seq
DB search
MNHSLIISGGGGSGSGAMNSGLPASAAPLGGAGIPNVKVKFCRYYAKDKTCFYGEECQFL
HEDPSMTSLPLHGGGSSPVPMSMAGGGGTPAGYPLSGSAAACPGSGGTGVSKKSETLGPA
STSLEGQLLTIPGMEGATLSDASLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTTSSSSP
SLLNDGAKNFSHSTHDPVNSPTSSLFSDFGALSISQRRKAPNPAASEFIPKGAPRMATMA
QSNVQAFPSPLFPHPGLSSSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNP
ANYMVPTTASDQGAHIIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQP
KANAPSFFMADELRQELINRHLITMAQIDHSENPDVPSEVDSYHSLFPLEPLPPPNRMQK
TSNFSYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVTLREVFT
TKAFGDHSLVFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESL
IWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLA
LMPQYQQADLVSLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQS
RLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQ
KDPSWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDE
KSILVVTYSDLKRCFDSTFQELQAAASGSL
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatagccttataatcagcggcggcggcggcagcggcagcggtgccatgaacagt
ggactcccagcttcagctgctccgctcgggggtgccgggatacccaatgtcaaggtgaag
ttctgccgatactatgcgaaagacaagacgtgcttttatggagaagagtgtcaatttctg
cacgaggatccgtccatgacaagcctgccgctgcacggtggcggcagtagccccgtcccg
atgtctatggccgggggtggcgggacgccagcggggtatcccctcagtggctccgcggcg
gcctgcccgggttccggcgggaccggagtgtccaaaaagagcgaaacgttggggcctgca
agcacgtcgctggagggacagctgttaaccatcccagggatggagggtgcaaccctgagc
gatgccagtcttaccaactcttacttcagcagcagcttcattggggtcaatgggtttgga
agcccagcagagtctaaatattcgatgatgcagcgaatgactaccagcagcagctccccc
agtctcctcaatgacggtgccaagaacttcagccacagcactcacgatccagtgaattca
ccgacatcctcactcttcagtgattttggtgctcttagcatttcccaaaggagaaaggct
cctaacccagcagcgagtgagttcatccctaagggagctccacgtatggccaccatggca
cagtccaatgtccaggccttcccctcgcctctctttccacatcctggtctcagcagttcc
acagctgctgcactggctccaggcatgtccttgtctgcaggctcttctcctctacactcc
ccaaaaattacgccgcacacctcccctgcccctcgtcggcgcagtcataccccaaaccct
gctaactacatggtgcccaccactgcatcggaccagggtgctcacattattcagaaagaa
actgtaggggggactacctacttctacacagacaacaccccagcaccaatggcggggatg
gtgtttcctacttaccatatctacccccccaccgcaccccatgtggcttacatgcagccg
aaagcaaatgccccatccttcttcatggctgatgagcttcgacaggagttaataaacaga
catctgataaccatggcccagattgaccactcagaaaacccagatgtaccgtctgaagtg
gacagctaccacagcctgttccccctcgagcctctaccaccaccaaaccgcatgcagaag
accagcaacttcagctacatcacttcctgctacaaggccgtcaacagcaaggatgacctg
ccttactgcctaaggaggatacatggtttccgcctcgttaacaccaagtgcatgatgctg
gtcgacatgtggaagaagatccagcactcaaactctgtaacactgagggaggtcttcacc
accaaggcctttggagaccactcgttggtgttctcttacgactttcacgcgggtgcagag
accatgttcagcagacacttcaatgacccagcagcggactcgtactttactaagaggaag
tggggacaacatgagcctcctccaccacggcagcacgcaggtctgctcccagagtctctg
atctgggcctacattgttcagttaagctcggccctgcgaaccatccacaccgcaggcctc
gcctgtcgtgtcatggaccccagcaagattctcatcactggcaagaccaggttacgggtg
aactgcgttggagtgtttgatgtcttaacatttgacaacagtcagaccaatcatcttgcc
ctaatgccacagtaccagcaagcagacctagtgtcactgggcaaggtggtgctggcgttg
gcatgtaactctctggctggcattcaaagggagaacctgcaaaaggccatggagctggtg
tctatcaactactcttcagacctcaagaacctcattctgtatctgctgacagaacagtct
cgcctgcgcagcgtcaatgacattatgccgatgatcggagcccgattctacacacaacta
gatgcatcgcagatgaggaatgatgtcatcgaggaggacctggccaaggaggtacaaaat
ggccgtctcttccgtctgttggccaaactgggcaccatcaacgagcgaccagagtttcag
aaggacccatcgtggtcagagacgggggaccgctatctgttgaagcttttccgggatcac
ttatttcaccaggtgacagaagcggggacgccctggatcgacctcagccacatcgtctcc
tgcctcaacaaattggacgctggtgttccagagaagataagtctggtgtctcgggatgag
aaaagcattctggttgtgacctactcggacctgaagcgctgctttgacagcaccttccag
gagctgcaggctgcagcctctggctctctgtag
DBGET
integrated database retrieval system
