Paralichthys olivaceus (Japanese flounder): 109642460
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Entry
109642460 CDS
T06037
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03020
RNA polymerase
pov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109642460 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
109642460 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pov03021
]
109642460 (polr2b)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109642460 (polr2b)
Enzymes [BR:
pov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109642460 (polr2b)
Transcription machinery [BR:
pov03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109642460 (polr2b)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109642460 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
109642460
NCBI-ProteinID:
XP_019962825
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNE
ARLRNLTYSAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLC
ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPT
STIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDF
DDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAREVLQKEMLPHVG
VSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLL
KEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNR
LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYI
SVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRR
QMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYS
WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFREL
PAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKP
TRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDC
STFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE
DMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVS
NLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNR
QPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRT
HTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttcagaggatcgtggaggatgcgccgcccattgacctgcaggctgaagctcag
cacacatcaggggaggtggaggagccgcctcgttacttactgaagtttgagcagatctac
ctgtcgaagccgacacactgggagagagacggcgctccgtctcccatgatgcccaatgaa
gcccgactacgaaacctgacgtactccgcccctctgtatgttgacattacaaagaccata
ataaaggagggggaggagcagctgcagacgcaacatcagaaaaccttcattggaaagatt
cccatcatgcttcgctccacctactgcctgctgagtggtctgacggatcgagacctgtgt
gagctcaacgagtgtccgctcgaccccggaggttattttatcatcaacggctccgagaag
gtgctgattgctcaggaaaagatggcgaccaacacagtgtatgtctttgccaagaaggac
tcgaagtacgcatacacagcagagtgtcgctcgtgtttggaaaactcgtctcgtcccacc
agcaccatctgggtcagcatgatggcgagaggaggacagggagtgaagaagagcgccatc
ggtcagaggattgtttccacgctgccctacatcagacaagaagttcccatcattatcgtg
tttcgagcgctgggcttcgtgtcagacagagacatcctggaacacatcatttatgacttt
gacgacccagagatgatggagatggtcaagccgtctctcgatgaagcttttgtgatccag
gagcagaatgtggcattgaactttattggttccagaggagcgaaacccggagtgacaaaa
gagagacgaatcaaatacgcaagagaagttctgcagaaagagatgctgccgcacgttggc
gtcagcgacttctgtgagaccaagaaggcctatttcttagggtacatggtccacaggttg
ctgctcgctgctcttggcagacgggagctggacgacagagatcactatggcaacaagagg
ctggacctagctgggcctctgttagcgttccttttcagagggatgtttaagaatctgttg
aaggaaatcagaatttacgctcagaagttcatcgacagaggaaaagactttaacctggaa
ctcgccattaaaaccagaatcatctctgacggactcaaatattcactcgccaccggaaac
tggggcgacgtcaagaaagctcatcaggcccgggctggagtttcacaggtgttgaaccgt
ttgacatttgcgtcgactctgtctcacctccgtcgagtcaactctccaattggcagagat
ggaaaactggcgaaacctcgacaactgcacaacacactttgggggatggtttgtccggct
gagacgcctgagggtcacgctgtgggtctggtgaagaacctggccctcatggcctacatc
tctgtgggctctcagccatctcccatcctagagtttctggaggagtggagtatggagaac
ctggaggagatttcccctgccgccatcgcagatgccactaagatctttgtcaatgggtgc
tgggtcggaatccacaaagatcctgaacagctgatgaacacactgaggaaactccgcaga
cagatggacatcattgtttctgaggtgtcaatgatcagagacatcagagaacgtgagatc
agaatttacacagatgctggacgaatctgccgcccactgctgatcgtcgagaaacaaaaa
ctgctgttgaagagacgacacatcgaccaactgaaggaaagagagtacaacaactacagc
tggcaggacttggtggcgagtggtgtggttgagtacattgacactctggaagaagagacg
gtgatgctcgccatgacccctgatgacctccaggagaagggcgtggcctactgttccacc
tacactcactgtgagattcacccgtccatgatcctcggagtttgtgcctccatcattccc
ttcccggaccacaatcagtctcccaggaacacgtaccagtctgccatgggtaaacaggcc
atgggcgtgtacatcactaacttccacgtgcgaatggacacactggctcacgtgttgtac
taccctcagaaaccactggtcacaacccgatccatggagtacctgcgcttcagagagctt
cctgcaggtatcaactccatcgtggccattgcatcgtacacaggatacaaccaggaggac
tctgtgatcatgaacagatcagcagtggatcgaggtttcttcaggtctgttttctatcga
tcctacaaagagcaggagtcaaagaaaggtttcgatcaggaggaaatctttgagaagccg
acccgtgaaacctgtcagggtatgaggcatgccatctacgacaagctggatgacgatggg
ctgatcgcacctggcgttcgtgtgtccggtgaggacgtgatcatcgggaagacggtgacg
ctgccggaaaacgacgacgagctggacagcaccaaccggcgctacacaaagagggactgc
agcaccttcctcagaaccagcgaaacaggcatcgtggaccaggtgatggtgaccctgaat
caggaaggctacaagttctgcaagatcagggtgcgttcggtccggattcctcagattgga
gacaagtttgccagccgacatggacagaaaggaacctgtgggatccagtacagacaggag
gacatgccattcacctgtgagggaatcacacctgacattatcatcaatcctcacgccatc
ccgtccagaatgactgtcggccatctgatcgagtgtctgcagggcaaggtgtctgcaaac
aagggtgagattggtgatgcgacgccatttaatgacgccgtgaatgttcagaaggtgtca
aacctgctctctgaatatggataccacctgagaggaaatgaggttctgtataacggtttc
actgggaggaaactaacgtctcagatcttcatcggtccgacgtattatcagcgtctcaaa
cacatggtggatgacaagatccactcgagggccaggggcccagtgcagatcctcaacagg
cagccgatggagggaagatcacgtgatggtggtctgcggttcggggagatggagcgtgat
tgtcaaattgctcacggagcggctcagtttctcagagagcgtctgtttgaggcatctgat
ccgtatcaagtccacgtgtgtaacctgtgtgggctgatggccatcgccaacacacggacg
cacacgtacgagtgtcgaggctgccgcaacaagacacagatctctctggttcggatgcca
tacgcttgtaaacttcttttccaagagttgatgtcgatgagcatcgcccctcgtatgatg
acatcgtaa
DBGET
integrated database retrieval system
