Paralichthys olivaceus (Japanese flounder): 109644042
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Entry
109644042 CDS
T06037
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pov03041
]
109644042 (ythdc2)
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109644042 (ythdc2)
Spliceosome [BR:
pov03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109644042 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Ank_2
DEAD
Ank
Ank_4
Helicase_C
AAA_19
HA2_N
nSTAND3
PhoH
AAA_7
AAA_22
Ank_5
T2SSE
Motif
Other DBs
NCBI-GeneID:
109644042
NCBI-ProteinID:
XP_019964885
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
MMSLRVLSGSLIVKEKNRIHVRCWRHSVHALGDKCIMLTTATSQSPPPRDEVHVNEEVKM
AVNFCLERFQSSEEREVDFPSCFSGTERAYIQRVAQSMGFLSKSKGKGLHRFLTIWKKDG
SAPSIMPLIISQKSLRFINSLLQKFPISHKGRTDVQPTDKSGICGPAHRYSSADRYKPLG
CLDNSAPFVPPSRNPSELDHFRRSLPIYESQEEIVQLIRANRVVLVVGETGSGKTTQIPQ
LLLDDCSMNIEPCRILCTQPRWLAVLVVAERVAKERGESVGQTVGYHIRLECRHGPMTLL
TFCTNEVLLKTLMSGDDCLKNVTHVIVDEVNERDGLTDVLLTKMQSVLQNIPTLKLILSS
AALDVDLFSQYFGRCPVIHLKGRQLEVQELFLEDVLKLTGFRKKLGTQRKEKQQTCLTKW
CKLVETGCIREKQRSPESVPGFVQDHSPLDREDATVTKPRQKDCEQLEPGLVKQMDSCLF
NIFYSQDQDSFSQLYNLILSENVNVDYRHSELGATALMMASSRGFMKQMEQLLIMGADIN
VKASNGWTALDFAQQFEHTDAVDLLKCSIPLREESTLESTGEQCVSAELSTEEQELLRLY
QQSCGDEWLDLDLIMDLLHYICSTTCDGHVLIFLPGHNEIVGLCYRILHDDKRFSSHSER
FQIFTPHSEVQTLEHRKVLSASLPGVRNIILSTNDAETSITINDVVFVIDTGLVKEKCFD
TVSRLSTLKTVWISKASALQRKRRAGCSRPGTCFHLFSRIRFNNMLNFQVPQLLQMPLQE
LCLQTKLLTPSCPVADFLSRAPQPPPAHVITDAVRMLEVTGAMDQNEDLTDLGYQLAELT
IEPHLGKMVLSAMVLKCLDPILTIACMLAYSDPFVLPVQGSQKRAALISRRHFTSCSVSD
HMALLTAFQAWQRACSNGSERSFCKKHFLSHSTMEKIHGIRIQLLAQLRAMGFVQANGSS
DIVELNHNSENWAVVKAALVAGMYPNVIHIDQESSLLSSNKKKIHFHPSSVLNQFKEKTS
SKSGEALPTEWLICDEIRRGKKVVSVRCCSLVTSITVAIFGGCASFPLEEHTVPSAAGSS
LSGRPQDDSDSGSEDVAEVKVDDWLAFQCESEGARMVLKLREMWQNLFTWRTSFPSKPCN
QKEQTVLKTLISVLTEEEQRAGLQQPSGIGQRPRTTTPGEWLQASVKTHKYSPQQPTSTG
RDK
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgcttcgtgttttatcaggatctttgattgtgaaggagaaaaaccggattcac
gtccgttgttggcgccactcggtgcacgcgctcggagacaagtgcatcatgttgacgaca
gccacaagccagagcccgccaccccgagatgaagttcacgtcaacgaggaagtcaagatg
gcggtgaacttctgtctggagaggtttcagtccagtgaagagagagaggtggactttccc
tcctgcttctctggtactgagagggcttacattcagcgagtggctcagtccatgggtttc
ctttctaagagcaaagggaaaggcctccatcgcttcctaaccatctggaagaaggatgga
tcagctccttctatcatgcctctcattatctcccagaagtccttacgtttcatcaactcc
ctgcttcagaaatttcccatcagccacaagggccgcacagatgtgcagcccactgacaaa
agtggcatatgtgggcctgctcatcgctacagcagcgctgacagatacaagccacttgga
tgcttagacaacagcgccccctttgtgcctccaagcaggaatccatctgaactggaccat
tttcgacgttccctaccgatttatgaatcccaggaggagatcgtccagctcatcagagca
aacagggtggtgctagtggtgggagagactggctccggaaaaactacacagatcccgcag
ctgctgctggatgattgcagcatgaacatagagccctgcaggatcctctgcactcagccc
agatggctggccgtcctcgttgtggctgaacgagtggcgaaggagagaggggagagtgtg
ggccagaccgtgggttatcatatcagactggagtgcagacacggtccaatgacactgctg
accttctgcaccaatgaagtgctgctgaaaacattgatgtctggagatgactgcctcaaa
aatgtgacacacgtcattgtggacgaggtgaatgagcgtgatggtctgactgacgtcctg
ctcacaaagatgcagagtgtgcttcagaatatccccacactgaaactgatcctgtccagt
gctgctctggacgtcgacctgttctcccagtactttggccgctgccctgttatccacctc
aaaggacgacagttggaagtgcaggaacttttcctggaggacgttctgaagctgacaggc
ttcaggaaaaagcttgggacacagagaaaggagaagcagcagacatgtttgaccaagtgg
tgtaagttagtggagaccggctgtataagggagaaacagaggagccctgagtctgtccca
ggcttcgttcaggaccacagccccctggacagagaggacgccaccgtcaccaagccgaga
cagaaagactgtgaacagctggagccagggctggtgaagcagatggactcctgcctcttc
aacattttctacagtcaagaccaggattccttcagtcagctctacaacctcatcctctcc
gagaatgtaaacgtggactacaggcacagtgagttgggggccacagctctgatgatggca
tcgagtagaggattcatgaagcagatggagcaactgctcatcatgggagctgacatcaac
gtgaaggcgtctaatggatggacggccttagactttgctcaacagtttgaacacacagat
gctgtggatcttctcaaatgctccattcctttgagggaggagagcaccctggagtccact
ggggagcagtgtgtcagtgcagagctgagcactgaagagcaggagctgcttcgactgtac
cagcagagctgtggtgatgagtggttggacctggacctcatcatggatctgctgcactac
atctgctccaccacctgtgacggtcatgtcctgatttttctccccggacacaatgagata
gtcggtctctgctaccgcatcctgcacgacgataagagattctccagccactctgagagg
ttccagatcttcactccacattcagaggttcagactctggagcacaggaaagtgttgagt
gcctctctacctggtgtcagaaacataatcctctccactaatgatgctgagacgagcatc
accatcaacgatgtggtatttgtcattgatacagggttggtcaaagagaagtgctttgac
accgtcagtcgcttatccactttgaagacggtttggatttcgaaagccagcgctttgcaa
aggaagagaagagctggatgcagcagaccagggacctgcttccacctcttcagtcgaatc
aggttcaacaacatgctgaatttccaggttcctcagctgctgcagatgccactgcaggaa
ctgtgtctgcagaccaagctgctcactccctcctgtccagttgctgatttcttgtccaga
gctccacagcctccgcctgcacatgtaatcacagacgctgtgaggatgcttgaggttaca
ggtgccatggaccagaatgaagacctgactgatttggggtaccaattggcggaactaacc
atagagccccacctgggcaagatggtgttgagcgccatggtgctgaagtgtctggacccc
attctaaccattgcttgtatgctggcttatagtgaccccttcgtccttcctgtgcagggc
tctcagaaaagagctgctctgatctcccgcagacattttacctcatgtagtgtcagcgac
cacatggccttgctcactgccttccaggcttggcagagggcgtgctctaacggcagtgag
agatccttctgtaagaaacacttcctgtcccactcgacgatggaaaagatacatggcata
aggatccagctgctcgcacagctccgtgctatgggttttgtgcaggccaatggaagcagt
gacatcgttgaactgaatcataattcagagaactgggctgtggtgaaggcagcgctggtg
gctggcatgtatccaaacgtgatccacatcgaccaggaatcctcactgctctctagtaac
aagaaaaagatccactttcatccgtcttctgtcctgaaccagttcaaggagaaaacatca
tccaaatcgggcgaggctcttcccacagagtggttaatctgtgacgagatacgtcgaggg
aaaaaggtggtcagtgtccgctgctgctccctcgtgacgtccatcaccgtggccattttt
ggtggttgtgcctctttccccctggaggagcacactgtaccgagcgcagctggttcttct
ctgtcaggccgtccgcaggatgacagtgacagcgggtcagaggacgtagctgaggtcaag
gtagatgactggctcgccttccagtgtgagtcagagggagccagaatggtccttaaactg
agggagatgtggcaaaatcttttcacgtggaggaccagttttccttcaaagccctgcaac
cagaaggaacagaccgtcctgaagaccctgatatctgtgctcacagaggaggagcagagg
gcaggtctgcagcagccctcagggattggccagcggccccggaccactacaccaggggag
tggctccaggcctctgttaagacccacaagtacagcccccagcagcccaccagcactggc
cgtgacaagtaa
DBGET
integrated database retrieval system
