Paralichthys olivaceus (Japanese flounder): 109644150
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Entry
109644150 CDS
T06037
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04382
Cornified envelope formation
pov04510
Focal adhesion
pov04512
ECM-receptor interaction
pov04518
Integrin signaling
pov04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109644150
04518 Integrin signaling
109644150
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109644150
09142 Cell motility
04820 Cytoskeleton in muscle cells
109644150
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109644150
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pov04147
]
109644150
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109644150
Exosome [BR:
pov04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109644150
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109644150
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109644150
NCBI-ProteinID:
XP_019965039
LinkDB
All DBs
Position
Unknown
AA seq
1613 aa
AA seq
DB search
GAPGGLGEQGRQGPPGFPGPQGPPGEKGQRGDEGPTGAAGLKGDVGSVGVFGFPGLEGVP
GHPGPAGGPGFPGLDGCNGTRGQRGDPGFPGEQGPDGEVGFPGLKGFPGDPTVYFIQYPG
LPGETGTSGLPGLQGKQGPPGPIGGLGPAGMDGTNGLPGLPGSRGPPGEKGRSLPGQKGD
EGEQGLQGPPGPFEYIDPPEDLYIKGEKGTRGVKGICGFKGLPGLDTLPGINGEKGILGF
PGSRGFSGSIGPVGEKGFKGIRGSPGLPGLIGREGPKGMMGDPGPKGLPQKADITHTGED
GDPGPSGPSGPPGHMGLMGMHGPPGAPGSLIPGPTGAVGQSGVPGSKGDRGDPGQVFTDG
PTPGEPGKAGRPGLRGPRGEPGNPGRYCLPGATGESGEPGQQGPPGTQGFPGIKGTDGDC
SCGPPFILRGPPGSVGDIGYSGFPGVQGAPGQRGEQGVPGDVGESGQQGLGGFPGVKGFK
GQKGDFIVVDIIGEKGNRGRPGPEGRQGLSGRRGLDGLPGAPGDPGLQGESFSSSPGERG
FPGFQGPKGLPGPPGSPGVGVVGAIGQAGVPGAPGPPGILGPPGPKGATGETLPCVPRNP
GPSGEKGDTGNAGYPGFPGPSGFRGITGPDGIKGDKGQSGLPGLPGRQGPPGFVGDTGEE
GPEGFSYGGDPGSPGIPGFPGLRGPAGDSEVGPSGPRGFPGPLGSQGPKGVPGTPGSDGL
QGAFGLAGGPGAKGQRGQDGAPGITGPPGPSPNFCEIGKPGSRGPFGPQGPTGPPGFQGE
KGETGEVGPPAFGPQGPSGKPGSPGFPGFPGLQGPTGPSGDSGLPGPNGQKGLLGPQGKY
GGPGAPGQTGSPGAPGPTGERGFNGRDGAQGCEGTKGEKGCKGAPGSPGETKYILFKGEG
GKQGTSGISGFPGPRGSKGVIGAPGNPGYPGINGPPGIIGPPGTTGRCSTPGLPGQPGRQ
GPPGLIGFPGETGDPGDMGCPGKSGKPGCEGYTGKKGDKGDSVGCPGVPGERGPPGDFGP
SGPPGPRGEPGGPGFIGDLGSKGCKGDPGHRGDPGQSGVIGPYGPRGRPGGPGLPGNAGT
DGPPGPQGCPGLQGPPGPLGLHGLDGLKGVKGDMGTRGLALPGPPGLKGLPGDKGPQGPP
GPCGPSQPGQPGAKGPAGPKGPQGSYGAPGKPGPSCKDPVPGPSGDPGFPGPDGEPGCPG
DMGDPGPNPAIAGDDGDNGDTGYRGPVGLKGYQGSKGLPGIAGDNGVKGMKGSQGLMGLP
GNQGQRGCPGPGGPRGPKGDDGLAGPKGEKGGVSPCPIYPPAQPGPPGPPGPPGKPGEIG
FMGETGPRGFKGITGDPGSEGPIGFVGPPGPDGNQGEAGLQGENGDVGAKGDSGPVGDLG
PPGQSKNLNSGFLLVRHSQSNQIPTCPFNMRVLWNGYSLLYLEGQEKAHTQDLGQAGSCM
QVFSTMPFSTCNMGACSYASRNDKSYWLSTTAALPSIPVSGPSIEEHISRCVVCEAPSSP
VALHSQTSDKPDCPPQWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLSDFRAQPFVECQ
GPRGTCHYFANIYSFWLTIVDTSTVASNSSSTTLTDGWQQRSNIGKCNVCMRD
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
ggagctccaggtggtctgggggagcagggtcgacaggggcccccaggattcccgggtcct
caggggcctcccggagaaaaggggcagagaggagacgaggggccaacaggagccgcaggc
ctgaaaggagacgtgggaagtgtcggcgtttttggatttccgggtttagagggcgtcccg
ggtcacccaggtcctgctggaggtccaggttttccgggtctggatggatgtaatggcacc
agagggcagagaggagatcctggatttcctggagaacaaggacctgatggagaagtgggt
tttccaggactgaagggatttccaggagatccaacagtttacttcatacagtaccctgga
ctacccggagagactgggaccagtggacttcctggacttcagggtaagcagggaccccct
ggtccaataggaggtctgggtccagcaggaatggacgggaccaacggtctccctggtctg
cctggatccaggggtccacctggagaaaaaggtcgatctctgcccggacagaaaggagac
gagggtgaacagggtctccaggggcctccagggccgtttgagtacatcgaccctccagaa
gacctgtacatcaaaggagaaaagggtactaggggggttaaaggcatctgtggattcaag
ggacttccgggtctggacacacttccaggaatcaacggagagaaggggattctgggattc
cctgggtccagggggttttctggcagcattggtccagtcggagaaaaaggattcaagggg
atcagaggaagtccaggtctcccaggtctgattggacgagaaggtccaaagggcatgatg
ggagatccaggacctaaagggctccctcagaaggccgacatcactcacacaggtgaggat
ggggaccctgggccctctggaccaagtggccctccaggacacatggggctgatgggaatg
catggacccccaggagcccctggcagtttaatacctggaccgacaggtgctgtgggtcag
agtggagttccaggatccaagggagacagaggagatcccggtcaagtctttaccgatgga
cccacccctggagaacctggaaaagcaggacgtcctggactcagaggaccgaggggagag
ccagggaatccaggtcgctactgtcttcccggggctacaggagaatctggagagccgggc
caacagggacctccagggactcagggcttcccaggaatcaaaggcaccgatggggactgc
tcctgtggccctccttttatactgaggggccctcctggctctgtgggtgacatagggtat
tctgggtttccgggagtccagggagccccagggcagagaggagagcaaggtgtacctgga
gatgttggagagagtggacaacagggtctgggtggattcccaggtgtcaaagggttcaaa
ggtcagaagggagatttcattgtggtggatattattggtgagaagggaaacaggggccgg
ccgggccctgaaggaaggcaagggctctcagggagaagaggacttgatgggctccctggg
gccccaggagaccccggtctgcagggtgaaagtttctccagttctcctggagaaagaggc
ttcccaggatttcaagggccaaagggattaccaggacccccaggttcccctggagtaggt
gtagttggtgctataggacaggcaggggtccctggagccccgggacctccaggaatcctg
ggtccaccagggccaaagggggctactggggagactctaccctgtgtacccagaaacccc
gggccctctggggagaagggagacacaggaaacgcaggttatccaggattcccgggacct
tcaggctttcgtggtatcacaggacctgatggaattaaaggagacaaaggacaatctgga
cttcctgggctacctggacgacaaggacctccaggttttgttggagacaccggagaagaa
ggacctgaaggcttcagttatggtggagatccaggctctccagggattccgggctttcct
ggactcaggggcccagcaggggactctgaggttgggccttcaggacccagaggtttccca
ggaccactaggctctcagggacctaagggagtccctggcacccccggcagtgacggactt
caaggagcctttggactggctgggggccctggagcaaagggccagagaggacaggatgga
gccccagggataactggtcccccaggcccctcacctaacttctgtgagatcggaaagcct
ggttccaggggtccctttggccctcagggacccactggaccaccaggttttcagggggag
aaaggagagactggggaggtgggtcctccagcttttggccctcaaggtccttcaggtaaa
ccgggctctccaggtttccctgggttcccgggtctgcagggccccactggccccagtgga
gactcaggactgccaggacctaatggtcagaaaggtctgcttgggccccaaggaaagtat
ggagggccaggagctccaggacagactgggtcccctggggctccagggccgactggggaa
agagggttcaatggacgagatggagctcaaggatgtgaagggacaaaaggagagaaaggc
tgtaaaggggccccagggtctcccggggaaaccaagtatatcctttttaaaggagaggga
ggaaaacaaggaacctctggcatcagtggcttcccaggaccacgaggaagtaaaggtgtc
ataggagctccaggaaatcctgggtatcctggaatcaatggacccccaggtatcatagga
cccccaggaacaacgggtcgctgcagtacgccaggattaccaggacaaccaggacgtcaa
ggacctccaggactcatcggcttcccaggagagacaggagatccaggtgacatgggatgt
ccggggaaatctggaaaacccggttgcgaaggatataccggaaagaaaggtgacaaagga
gactctgttggttgtcctggtgtaccaggagagagggggcctcctggagacttcgggcca
tcaggacctcctggacctcgtggagagcctggaggacccggtttcattggggatctgggt
tcaaaaggatgtaaaggagatcctggccaccgcggagacccgggtcaatcaggtgtgatc
ggtccctatggtcccagaggtcgtccaggtggtcctggtcttcctggcaatgcaggtact
gatggacccccaggaccacagggctgcccaggacttcaagggcctcctggaccgctggga
cttcatggactggacggacttaaaggagtgaagggggacatggggactagaggtctggct
ctgccaggtcctccaggtctcaaaggtcttccaggggataagggtcctcaaggtcctcca
ggtccctgtggtccatctcagccaggacaaccaggagcaaaaggccccgcaggacccaaa
ggacctcaaggcagttatggagctccaggtaaacctggaccaagctgtaaagatccagtc
ccaggccctagtggagatcctggtttccctggaccagatggagagccaggttgtcctggg
gacatgggggatcctggtccaaaccctgccatagctggggatgatggagacaatggagac
acaggctacagaggaccagtgggtctaaagggatatcaaggatccaaaggattgccaggc
atcgctggagacaatggagtgaaaggtatgaaggggtcacaaggtctgatgggactacct
ggtaatcagggacaaagaggttgtcctggtcctggagggcctcgtggacctaaaggtgat
gatggattggcaggtccaaaaggagaaaagggaggagtctccccctgccccatctaccct
cctgcccaaccgggccccccaggtccccctggcccccctggtaaacctggagagattggc
ttcatgggagaaactggcccgaggggttttaaaggtataacgggggatcccgggtctgaa
ggaccaattggttttgtgggccccccaggtccagatggaaaccaaggagaggccggcctg
cagggggagaacggagatgttggagccaaaggtgattctggtccagtcggtgacctcggt
cctcctggacaatccaaaaacttgaactcaggtttcctgttggtgaggcacagccaatca
aatcaaattcccacctgtccatttaacatgagggtcctatggaacggatacagtctgctg
tacctggagggtcaggagaaggctcacactcaggacctgggtcaggcggggtcgtgtatg
caagtcttttccactatgccgttctccacctgtaacatgggagcctgctcttacgccagt
cgtaacgacaaatcctattggctgtccacgacggcggccctccccagcatacctgtgagc
gggccctccatcgaagagcacatcagccgctgtgtggtgtgtgaagccccctcctcacct
gttgcactccacagccagacttccgacaagccagactgccccccccagtggacgagcctg
tggacaggatactcgtttctcatgcatacaggtgcaggtgatgagggtggcggtcagtct
ctgacgtcatcagggagctgtctgtcggacttcagggcccagccctttgtggagtgtcag
ggaccccgaggaacctgccactactttgccaacatctacagtttctggctgaccatagtg
gacacgagcaccgtcgcctccaacagctcctccaccacgctgaccgacggctggcagcag
aggagcaacatcgggaagtgcaacgtctgcatgagggattga
DBGET
integrated database retrieval system
