Paralichthys olivaceus (Japanese flounder): 109646160
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Entry
109646160 CDS
T06037
Name
(RefSeq) collagen alpha-1(XV) chain-like isoform X1
KO
K08135
collagen type XV alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pov00535
]
109646160
Proteoglycans [BR:
pov00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109646160
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
109646160
NCBI-ProteinID:
XP_019967439
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
MGALRLSLALLFLFCSPARAQWWSFIWANPKTSSGSSPPSVPPSSTSPSITSPGLSDTLW
TTGQVGVQVTKERVEDGTQTEGSVLAPTPEPGEFISGRITAERGVLSPEENAGADSKTRP
QNKPLKHWKSERGSGGHLDLTELIGVPLPPSVSFTPGYEGFPAYNFGPEANIGRLTKTFV
PGAFYKDFAIIVTVRPASQRGGMLFAITDARQQVVELGLALTPVRGGLQSILLYYTDREQ
VSHSHKAAAFSVPDMTDQWTRFTVVVEQEEVRLYMDCGEAERATFHRRPDRLTFSHNSGI
FVANAGSTGLDKFVGSIQQLVIKDDPRAAEEQCEDDDPYASGYASGDDALDDRETEEEMT
KNKQERKHGMAQEEDSVPVRAPPTEAPEVELEEFSGHMTPTEGKEEMIREPHQTEEAGER
SGDVSSDVDPVTGHVRPGLKGERGDVGPPGPPGPPGPTPRPGQVQPGPRGPQGPAGTPGS
PGLPGRDGQQGNKGDKGDAGQKGSPGFPGLNGEAGPRGYKGDPGIGLPGPPGLPGPPGPP
RSRSVPYGADALGSGFEDLDSDTELIRGPPGPPGPPGPPGPSGSTMLPDTAEGLPSGHGG
PLGVPGRDGATGKPGIPMIEDWFSGSGPDESGLSSEWSSDLGSDFGSGFSSGFSPESSFA
SGSGLVFGSAWGSGEGPAGKDGTPGLQGAMGEKGNPGLTGPPGPKGECGSLGTAGVPGPQ
GPSGPQGERGPIGPPGLPGPPGPPATKFFVEDMEGSGKSDMLIGAGVRGPQGPPGLPGPQ
GPKGEDGTPGSPGISVKGEPGDPGADGLQGPAGLPGARGVKGERGNPGPKGDRGADGLSI
AGPPGPPGLPGPIFNLQDLLINITDGIFNFTELRGPPGPMGPEGLAGRAGFPGPRGPKGD
IGYQGIQGPSGLKGEKGEPGVTIAADGSLLSAPRSPQGPKGIKGDRGFPGPAGVMGPIGP
TGLKGEYGFPGRPGRAGLPGRKGDRGESVGLQGPPGPPGPPGVPGRILGLNGTVFPVRPR
PHCKKGRESVTRGDSVGAKGDKGDEGMPGEPGTTERVFLDGIVGARGDQGNKGEKGEKGD
AGVAGPPGMPGRSGLVGPKGESIVGPQGPVGSPGVSGAPGFGRPGPRGPPGPAGPPGPAP
SYGSDVNIPGPPGPPGPPGSSGSNNLVTIYKSIHALVRESQRAPEGTLAYVSERGGELYI
KRRNSWRKIQLGELLHYGPSSSTETQLGVPGEYSRPHRSHSQELQEGGRGYQPSFNVLPQ
TFNAVPGLHLVALNTPLKGDMRGIRGADLQCYQQARSVGLTATYRAFLSSHLQDLATIVR
KADRNDMPVVNLRGEVLFSSWMSIFSGNGGTFNPSTPIYSFDGRNVMTDSAWPEKLVWHG
SSTVGIRLTHNYCEAWRTGDMAVTGQAALLQTGRLLGQHTRSCSNPYIVLCIENTYVGNT
HLRRT
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgggagcccttcgcctctctcttgctctcctcttcctcttctgctctcctgcacgagcc
cagtggtggagtttcatctgggcaaaccccaaaaccagctcaggctcctctcctccctcc
gttcctccctcttccacctctccatccatcacctccccgggcctttctgacaccctgtgg
acaacagggcaagtgggagtgcaggtgacgaaggaaagagtggaggatggcactcagaca
gaggggtctgttctggcgcctacacccgagcctggagagttcatctctggccgtatcact
gcagaacgtggggtgctatctccagaggagaatgcaggtgcagacagcaaaaccaggccc
caaaacaaaccactgaaacactggaagagtgagcgaggctcggggggtcacctggacctg
actgagttaattggcgtgccgctccctccctcggtctctttcactcctggatatgaaggg
tttccagcttacaactttgggcccgaagccaacatcggccggctcaccaagaccttcgtg
ccgggggcgttctacaaagattttgccatcatcgtcacggtgcgaccagccagccaaaga
ggagggatgctctttgccatcacagacgcccggcaacaggtggtggagctgggtttggcc
ctcactccggtgcgtgggggcctccagagcatcttattgtactacactgacagagagcag
gtgtcccacagccacaaagctgcagccttcagtgtccccgacatgactgaccagtggaca
cggttcacggtggtggtggagcaagaggaggtgcgtctctacatggactgtggagaggca
gagagggcaactttccatcgcaggccggatagactcacgttttctcacaactcaggcatc
tttgtcgctaacgcaggaagcactgggcttgacaagtttgtgggctccattcagcagctg
gtgataaaagatgatccaagggcggctgaggagcagtgtgaagatgatgatccttatgcc
tcgggatacgccagcggagatgatgctctggatgacagagagacggaggaggaaatgacc
aagaacaaacaggagagaaaacacggcatggcacaagaagaggacagcgttccagttaga
gctcctcccactgaggctccagaggtggagctagaagagttttctggtcacatgacacca
acagagggcaaagaagaaatgataagagagccacaccagacagaggaggcaggagagaga
tccggagacgtaagttcagatgtggacccagtcaccggtcatgtcaggcctgggttaaaa
ggagagcgtggagatgtcggaccacccggaccacctggtcccccgggaccgacccctcga
cctgggcaagttcaacctggaccaagggggccccaagggccagcagggacccccggatcc
cctggactgccagggagagatggacagcagggaaacaagggtgataaaggagacgcaggt
cagaaaggatctccgggatttccaggtttgaatggagaagctggaccaagaggatacaag
ggagacccaggaattggtttaccaggccctcccggcctccctgggccacctggaccccca
agatcacgcagtgtaccttatggagcagatgctctgggttctggctttgaagacttggac
agtgacactgaactaatcaggggtcctcctggaccaccagggcctccagggcctcctggt
ccctctggatctaccatgctacctgacacagctgaaggcctcccctctggtcacggtggc
ccccttggtgtccccgggagagacggggccacaggcaaacctggaataccaatgatagag
gattggtttagtggttctgggcccgatgagtcaggtttgagctcagagtggtcctctgac
ctcggctcagacttcggctccggtttcagttctgggttcagccctgaatccagtttcgcc
tctgggtctgggcttgtcttcgggtctgcttggggttcaggcgagggtccagcaggaaag
gatgggactccaggtctacaaggagctatgggagagaagggtaacccagggttaactggt
ccacctgggccaaagggtgaatgtggctctctgggcacagcaggagtcccggggccccaa
gggcccagtggcccacagggggagagaggcccaataggtcccccaggactgcccggaccc
ccaggacctccagcaaccaaattctttgtagaggatatggagggatcagggaagagtgac
atgctcattggagctggagtcagagggccacagggtcctcctggcctacctggcccacaa
ggacctaagggtgaggacggaacccctggatctccagggatctctgtcaagggtgaacca
ggagacccaggagcagacggtcttcagggtcctgctggactaccaggggctcggggggtg
aaaggtgaaaggggaaatccaggaccaaagggtgatcgaggtgctgacggactcagtatc
gcaggaccacccgggcctcctggactgcctggacctattttcaatttgcaggatctgctc
atcaacattacagatggaattttcaacttcacagagctcagaggaccaccggggcctatg
ggccctgaaggcttggcaggcagagctggatttcctggccccagaggaccaaagggagac
ataggttatcagggtatccaggggccttcaggactcaagggagaaaaaggagagccggga
gtcaccattgctgctgatggatctctcttatctgcacccagaagcccccaagggcccaaa
ggcattaagggtgaccgtgggttcccaggaccagctggagttatgggcccaataggacct
acaggactaaaaggagaatatggcttccctggtcgcccagggcgagctggtttgcctggg
aggaaaggggacagaggagaatctgttggcctgcagggaccaccaggtcctccaggccca
cctggagttccaggaaggattcttggtctcaatggaacagttttcccggtgcgccccaga
ccgcactgcaaaaagggacgagagtcagtgacaaggggagattcagttggagctaaaggt
gacaaaggagatgaggggatgcccggagagccaggcacaactgagcgtgtatttctggat
ggaattgtgggtgcgaggggagatcaggggaacaaaggtgaaaagggagaaaagggggac
gccggtgtggctggtcctccaggaatgcctggcaggtcaggattggtgggtccaaaaggt
gagtccatcgtgggtcctcagggtcctgtaggttctcctggcgtgtctggagcccctggg
ttcggacgacctggcccccgaggcccccctggccccgccggccctccaggacctgcacct
tcatatggatctgatgtcaacatacctggccctccgggtcctcccggtccaccaggatct
tcaggatccaacaacctggtgaccatctataaatcaatccatgctctggtcagagagagt
caacgggctccagagggaaccctggcttatgtgtctgagaggggaggggagctgtacatc
aaacgacggaacagctggcgcaagatccagctcggagagttgctccattacggaccttcc
tcctcaacagagactcagctcggcgtacctggagaatatagcagaccacacaggagccac
agccaggagctgcaggagggcggtagaggataccagccgagctttaacgtactaccccag
acctttaatgctgttcctgggctccatctggtagcactgaacacccctctgaaaggggat
atgcgcggtatccgcggggcagacctccagtgctaccagcaggcgcgctccgtgggactg
acggccacatacagggccttcctgtcctcacacctgcaggacctggcgaccatcgtgagg
aaggcggaccgcaatgacatgccagtggttaatctcaggggtgaagtgttgttcagtagt
tggatgtccattttctctgggaatggaggaacatttaatccatccactcccatttactcc
tttgatggacgcaacgttatgactgattcagcatggccagagaagctggtgtggcatggc
tccagcaccgttggcatccgtctgacccacaactactgcgaggcgtggaggacaggcgac
atggcggtgacgggccaggccgcgctgctgcagacgggacgactgctgggacaacacacc
cgctcctgctccaacccctacatcgtgctgtgcatagagaacacatatgtgggcaacaca
catctgaggaggacctga
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integrated database retrieval system
