Paralichthys olivaceus (Japanese flounder): 109647518
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Entry
109647518 CDS
T06037
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03013
Nucleocytoplasmic transport
pov03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109647518
03015 mRNA surveillance pathway
109647518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109647518
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109647518
5.6.2.5 RNA 5'-3' helicase
109647518
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109647518
mRNA cycle factors
Common to processing body (P body) and stress granule
109647518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109647518
NCBI-ProteinID:
XP_019968890
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRMSNMYFQTHDQIGMIGTGSNPMTSMNI
PIPFNLVMPPIPPSGYMGQVNGPTGGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHGGG
NGGADRGHGGHMSGSQASQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYL
GDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagactctgacgttcctggacacggaggaa
gcggagctgctgggagcggacacccagggctccgagtacgacttcaccgatttcaccctg
ccgagccagacccagacccaaggccagacccagagtcagctcgacgggcaggttaatggt
cctgacggggtgctgcagaatggagacgaccctgtggtgaaagccagtcagctgctagca
gagctgaactttgaggaagatgaggaggatacctactacaccaaggaccttcctgtccat
gcctgcagttactgtgggattcatgatccagcctgtgtggtttactgcaacaccagcaag
aagtggttctgtaatggccgtggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgactctgcataaagatggacctctaggggaaacggtactg
gagtgttacaactgtggctgtcgcaacgtcttcctgctgggcttcatccctgccaaggct
gattcagtcgtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaagat
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtcaaaatcccctcagagcaggagcagctcagggcccgtcagatcaccgcccagcag
atcaacaagctggaggaactctggaaggaaaatcccactgcaaccctggaggacctggag
aagcctggtgtagatgaggagccgcagcacgtcctgctccgctatgaggatgcttatcaa
taccagaacatctttggtcctctagtgaagctggaagctgactacgacaagaaactcaaa
gagtcccagactcaagacaacattacagtcaggtgggacttgggactgaataaaaagaga
attgcatatttcactcttcccaagacagactcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggctcctccatggaaaggcattggacacgtcatc
aaagtccctgataactatggcgatgagatcgctatagagttacgaagcagtgccggggct
ccagtggagatcccacacaacttccaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagtgccctgaagacgtttgctgtggatgagacctcagtgtctggttacatc
taccacaaactgctgggacacgaggtagaagatgtggtcatcaagtgtcagctgcccaaa
cgtttcactgctcaaggcctgcctgatctcaaccactcccaggtatatgctgtgaagaca
gtgctgcagcgccccctcagtctgatccagggacctcccggcacagggaagacagtaacc
tctgccactattgtctaccacctggctcgacagggtaacgggccagtgctggtgtgtgct
cccagtaacatcgctgttgaccagctgacagagaagatacaccagacaggactcaaggtg
gtgaggctctgtgccaagagcagagaagccattgactcgcctgtctccttcctggctttg
cacaaccagacccgcaacatggacagtatgccagagcttcaaaagcttcaacagctgaag
gacgaaactggtgagctgtcatcctcagacgaaaagcgctaccgagctctgagacgtacc
gctgagagggagctgcttatgaatgctgatgtgatttgttgtacctgtgttggtgcgggg
gatcctcgtctggctaagatgcagttccgctcaatcctgatcgatgagagcacccaagct
actgaaccagagtgcatggtgcctgtcgtcctgggggccaagcagttgattttggtgggt
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttctggggatccgaccaattcgtctgcaggtccag
taccgcatgcacccagccctcagcgcctttccctctaacatcttctatgaaggctctctg
cagaacggagtcactgctgcggaccgtgtgaagaaaggctttgactttcagtggccgcag
cctgacaagccgatgttcttttacgttacacaaggccaagaggaaattgccagctctgga
acatcatatctgaacaggacagaggcagccaatgtggagaaaatcaccacgaggttgctg
aaggctggagcaaaacctgatcagatcggcatcattactccgtatgagggacagaggtca
tacctggtccaatacatgcagttcagtggctccctccataccaagctctatcaggaggtg
gagatagccagtgtggacgcttttcaaggcagagagaaagactttatcatcctgtcctgt
gtgagggccaatgagcaccaaggcatcggtttccttaatgatcccagacgtctaaatgtg
gcactcaccagagccaggtatggtgtgatcattgtgggaaaccccaaggccctgtccaag
cagcccctgtggaaccacctgctgaactactacaaggagcagaaggtcctggtcgaaggc
cccctcaacaacttgagggagagcctcatgcagttcagcaagccacgaaagctggtcaac
accatcaaccctgggggtcgatttatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtttatgaccgcagcagcaacggacgcatgtccaacatgtattttcag
acccatgaccagatcggtatgattggcacaggctccaatcccatgacctcaatgaacatc
cctatccccttcaacctggtgatgccccctatacccccctctggatacatggggcaggtc
aatgggcccacaggaggtcgtggtggaggtatgaaggggaaagcaggcagtggaggtgga
ggcgggactcgaggtggtcgtcaaagaaaccgtggcaacatgggaaaccatggtggaggg
aatggaggagcagaccgtgggcatggaggacatatgagcggcagccaggccagtcaggac
ctgggctcccagtccttctcccagggtcctctgacgcagggctacatcaacatgagccag
ccgtcacagatgagtcagcctgggctctcacagcctgaactctcccaggacagttaccta
ggagacgagttcaagtcccaaattgatgtggctctgtcccaggactccacctaccagggg
gagcgggcctaccaacacggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
