Paenibacillus sp. 32O-W: IJ21_01550
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Entry
IJ21_01550 CDS
T04219
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pow
Paenibacillus sp. 32O-W
Pathway
pow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ21_01550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pow03019
]
IJ21_01550
03016 Transfer RNA biogenesis [BR:
pow03016
]
IJ21_01550
Enzymes [BR:
pow01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IJ21_01550
Messenger RNA biogenesis [BR:
pow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IJ21_01550
Transfer RNA biogenesis [BR:
pow03016
]
Prokaryotic type
tRNA degradation factors
IJ21_01550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_RNR_1st
DUF7347
CSD
S1_RRP5
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ALS25609
LinkDB
All DBs
Position
complement(157962..160643)
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AA seq
893 aa
AA seq
DB search
MTITERDVLEFMRETAYKPMTYQELEQHFGIQDAGEFKAFLQQLNRLEAEGQIIRTRNDR
YGVPERMNLLRGKLQSHPKGFAFLLTDDDEHPDVYIHANDLKGAMNGDTVLVRITSKSEG
GGRMEGEVVRIVQRAVKEIVGTFDNHEYYGFVIPDDKRIQKDIFVPKGSFGGAVTGQKVV
VRIVKYPEGKRTAAEGEIVEILGHKDDPGVDILSVIRKHQLPEAFPEEVLAEADAVPDTI
SEDEIAAQGRRDLRNKVIVTIDGEDAKDLDDAVHVERLDNGNYVLGVHIADVGYYVKEKS
ALDQEAYRRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTLSCEMEFDGKTLKRVRHD
IYTSVIRTTERMTYTNVRRILTATEEEPETELMERYAGLIDMFRLMEELAMKLRRKRMQR
GAIDFDFQEAKVIVDEQGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRLPFLYR
VHEEPDSEKLLHFLQFASNFGYVVKGKSNSIHPRALQSLLEEIRGAKEETVISTMLLRSM
KQAKYAAESLGHFGLAAEFYTHFTSPIRRYPDLVIHRIIREVLENGGMLPEHRIDALAAR
MPDIAQQSSERERVAVDAERDTERMKKCEYMLDKIDEEFDGIVSGVTSFGMFVELDNTVE
GLIRLSSLADDYYHFDELHMVLIGERTSKVYRIGDEVRIRVARVNMDDYTIDFEMVDVRP
RGRYRGYAEAGYGGSRKGGRRGAAGGGRYGRDAGRGEAPARGGKPRKNRRGGDAAAADEA
QREPLSEAGAREAGLGEDAHPSHGDGEVRKDMWGLPIPGSPRSGAARGRNGAPRGGRAAA
GSGASRRKKTSPTGIFVGDGGGGAAAGAGAKPRKKKRGGAGNGTAAFVRKKRK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
ttgacgattacggagcgcgatgtgctggagtttatgcgggagacggcatacaagccgatg
acgtatcaggagttggagcagcatttcggcattcaggatgccggcgaatttaaagcgttt
ctgcagcagttgaaccggctggaagcggaagggcaaattatacggacccgcaatgaccgc
tacggcgtgccggagcggatgaatttgcttcgcggaaagctgcagtcgcatccgaaaggg
tttgcctttctgctgacggatgacgacgagcacccggatgtctatattcatgccaatgat
ttgaaaggcgccatgaacggggatacggtgcttgtccggatcacgtccaaaagcgaaggc
ggcggacggatggaaggcgaggttgtccgaattgtgcagcgggccgtgaaagagatcgtc
ggcacgttcgacaaccatgaatattacggatttgttattccggatgacaaacggattcag
aaagatattttcgttccgaagggatcgtttggcggagcggtaacggggcagaaggtcgtc
gtccgcatcgtgaaatacccggaaggcaaacggacggccgccgaaggggaaattgtggag
attctcggccataaggacgatccgggggtcgacattttgtcggtgattcgcaagcatcag
ctgccggaagcttttccggaggaagtgctggcagaggcggatgcggttcccgacacaatc
tcggaagatgaaatcgccgcccagggtcgccgggatttgcggaacaaagtcattgtgacg
atcgacggcgaagatgccaaggatctcgatgacgcggttcatgtggaacggctggacaac
ggaaactatgtgctcggcgtccatattgccgatgtaggctattatgtgaaggagaaatcg
gcgctcgatcaggaagcgtaccggcggggctgcagcgtctacctcgtcgaccgggtcatt
ccgatgctgcctcaccggctctcgaacggcatctgttcgctcaatccgaaggtggatcgg
ctgacgctgtcgtgcgaaatggaattcgacgggaagacgttgaagcgggtgcggcacgat
atttatacgagcgtcattcggacgacggaacggatgacttatacgaatgtgcgccgcata
ctgaccgcgacggaagaggagccggagaccgagctgatggaacggtatgccgggctgatc
gacatgttccggctgatggaagagctcgcgatgaagcttcgccgcaagcggatgcagcgg
ggcgcgatcgatttcgattttcaggaagcgaaggtcatcgtcgatgaacaaggcaaagcg
gtcgatatcgtcaagcgggaacgatcggtcgccgagcagattatcgaggagtttatgctg
gcggcgaatgagacggttgcggaacattttcactggctgcgcctgccgtttctgtaccgg
gtccacgaggagccggacagtgaaaagctgctacacttcctgcagtttgcttccaatttc
ggctatgtggtgaaagggaagagcaattcgatccatccgcgtgcgctgcagtcgctgctc
gaggaaattcgcggtgcgaaggaagagacggtcatttcgacgatgctgctccgctcgatg
aagcaggcgaagtacgcggcggaaagcctcgggcatttcgggctcgcggctgagttttac
acccatttcacgtcgccgattcgccgttatccggacctcgtcattcaccggattatccgc
gaggtgctggagaacggcgggatgctgccggagcatcgcatcgatgcgctggccgcgagg
atgccggacattgcgcagcaatcgtcggagcgggagcgtgtggcggttgacgcggagcgg
gatacggagcggatgaagaaatgcgagtacatgctggataagatcgacgaggaatttgac
ggcattgtcagcggcgttaccagcttcggcatgttcgtggagctggacaatacggtcgaa
gggctcatccgcctcagcagcctggccgacgattattatcatttcgatgagctgcatatg
gtgctgatcggcgagcgcacctcgaaggtgtaccggatcggcgacgaggtgcgtattcgc
gtggcgcgcgtcaatatggacgactatacgatcgatttcgagatggtcgacgtccggccg
cgcggccgttatcgcggctacgccgaagcgggctacggcggctcgcgcaagggcggccgc
cgcggcgctgccggcggcgggcgatacggccgcgatgcgggcaggggcgaagcgcccgca
cgcggagggaagccgcgcaagaataggcgcggcggagatgccgctgcggcggatgaggcg
cagcgggagccgttgtccgaggccggggcgcgggaggccggcctcggcgaggatgcgcac
ccgagccatggcgatggcgaggtgcgcaaggatatgtgggggctgccgattccgggcagc
ccacgcagcggcgccgcgcgcggccggaacggcgcgccgcgcggcggccgtgcggcggcg
gggagcggtgcatcccgccgcaagaagacgtcgccgacggggattttcgtcggcgacggc
gggggcggcgcggccgccggggccggggcgaagccgcgcaagaagaagcggggcggcgcc
ggcaacggtacggcggcgttcgtccgcaagaagcggaagtaa
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