Paenibacillus sp. 32O-W: IJ21_15020
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Entry
IJ21_15020 CDS
T04219
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pow
Paenibacillus sp. 32O-W
Pathway
pow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ21_15020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pow03019
]
IJ21_15020
03400 DNA repair and recombination proteins [BR:
pow03400
]
IJ21_15020
Enzymes [BR:
pow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IJ21_15020
Messenger RNA biogenesis [BR:
pow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IJ21_15020
DNA repair and recombination proteins [BR:
pow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IJ21_15020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_23
HHH
Helicase_Sgs1
GerE
Motif
Other DBs
NCBI-ProteinID:
ALS26906
UniProt:
A0A0U2WP08
LinkDB
All DBs
Position
1671880..1674039
Genome browser
AA seq
719 aa
AA seq
DB search
MLDQARAALKRIYGYDSFRKGQEDIIEGILAGRDTLAILPTGGGKSVCYQIPAMLLPGTT
VVVSPLISLMKDQVDALNRLDVPAAFLNSSLGAAEYRDVMRHALQGDYKLLYIAPERMDA
PMFASLAERMHIPLIAIDEAHCVSQWGHDFRPSYRQLAEWISRMPNRPVVAGFTATATPE
VSADIARMLGLRSPNIYVTGFARPNLSLSVVSGTGKKAFLQRFLAERAEQPGIIYTATRK
EADQVHAELLAAGIAAGKYHGGMSDDERTAAQEKFRFDEIRVMVATNAFGMGIDKPNVRF
VLHWQMPGDLESYYQEAGRAGRDGEESECVLLFEPQDIQVQRYLIEQGAGDETRKSIQLS
KLYQMMNYCRTQRCLQQAIVAYFGEEDVPPCGKCSNCLDKSELVDRTTEAQKALSCVGRM
KGRFGVTMAAKVLKGSRDKRLLEFGLDRLSTYGLLREWPEKEIADWLYWLVAEGYLKMSE
GAYPTVSLTARALPVLDGSERVMQRVRATVRRSSSDPAAASPAFEALRQWRKEAAAREGI
PPFMLFFDATLRELAERLPVTADELLGVKGVGAAKAAKYGEEVLAITRRFADAERSGDAD
GGMRMPLPDADAPSARTEEEGPSHIRTLEMFRAGHTVEAIAAARGLSKVTVEGHIIRCAE
EGHAVDWERIVPPDREQQILDTVRALGADRLRPIKDALPDDIPYFAIHGVICKYGLRRG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaccaggctagggcggcgctgaagcgcatatacggctacgactcgttccgcaaa
gggcaggaggacattatcgaaggcattctcgcgggacgggatacgctggccatcctgccg
accggcggcgggaaatcggtctgttatcaaattcccgccatgctgctgcccggcacgacg
gtagtcgtttcgccgctcatctcgcttatgaaagaccaggtggatgcgctgaaccggctc
gatgtgccggccgctttcctgaacagctcgctcggcgccgccgaataccgggacgtgatg
cggcacgcgctgcagggcgattacaagctgctctatatcgcgccggagcggatggacgcg
ccgatgttcgcttcgctggccgagcggatgcatattccgcttatcgcgatcgacgaagcc
cattgcgtatcccaatgggggcatgattttcgcccgagctaccggcagctggccgaatgg
atctcccggatgccgaaccggccggtcgtcgccggtttcacggccaccgctacgccggaa
gtgtccgcggatatcgcgcggatgttggggctgcgctcgcccaacatttatgtgacgggg
ttcgcccgcccgaatttgtcgctgtccgtcgtcagcgggaccgggaaaaaggcgtttctg
caacgttttctggcggaaagggcggagcagcccggcatcatctatacggcgacccgcaag
gaagccgatcaggtgcatgcggagctgctcgcggcgggcattgcggcgggcaagtatcac
ggcggaatgagcgacgacgaaagaacggccgcgcaggagaaattccgcttcgacgagatt
cgcgtcatggtggcgaccaatgcgttcggaatgggcatcgacaagccgaatgtccgcttt
gtgctgcattggcaaatgcccggcgatctggaatcgtattaccaggaagccggaagagcc
ggacgcgacggggaggaaagcgaatgcgtgctgctgttcgagccgcaagacattcaggtc
cagcgctatttgatcgagcaaggagcgggcgacgagacgcgcaaatcgattcagctgtcg
aagctgtaccagatgatgaactattgccgcacgcagcgctgcctgcagcaggcgatcgtc
gcgtatttcggcgaagaggatgtgcctccgtgcggcaagtgcagcaattgtctggacaag
agcgaactcgtcgaccggacgacggaagcgcagaaggcgctgtcctgcgtcggcagaatg
aaagggcggttcggcgtcacgatggcggccaaagtgctgaaaggctcgcgcgacaagcgg
ctgctggaattcggtctcgaccgcctgtcgacatacggcctgctaagggaatggccggag
aaggaaatcgccgactggctgtactggcttgtggcggaagggtatttgaagatgagcgaa
ggggcttatccgacggtctcgctgacggcgcgcgcgctgcccgtgcttgacggttccgag
cgggtcatgcagcgggtgagagcgaccgtaaggcgctcgtcgtccgatccggccgccgct
tcgccggccttcgaggcgctgcgccaatggcggaaggaagcggcggctagggaaggcatt
ccgccgttcatgctgttcttcgacgcgacgctgcgcgaattggccgaacggctgccggtt
acggccgatgagctgctgggcgtgaaaggagtcggcgccgcgaaagccgcaaaatacggg
gaagaggtactggcgattacccggcgcttcgccgatgcggaaaggagcggcgatgcggac
ggaggaatgcggatgccgcttccggatgcggacgcgccttcggcgaggacggaagaggaa
ggcccgagccatatccggacgctggagatgttccgggcggggcacaccgtcgaagcgatc
gcggccgcgagaggtttgagcaaggtgacggtggaaggacatattatccggtgcgccgaa
gaagggcatgcggtggactgggaacgaatcgtgcctccggatcgggagcagcagattttg
gatacggtaagagcgctcggcgcggaccggcttcgcccgatcaaggacgcgcttcccgac
gacattccctatttcgccatccatggcgtcatctgcaagtacgggctgcgccgcggctga
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integrated database retrieval system
