Paenibacillus sp. 32O-W: IJ21_22110
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Entry
IJ21_22110 CDS
T04219
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pow
Paenibacillus sp. 32O-W
Pathway
pow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ21_22110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pow03019
]
IJ21_22110
Messenger RNA biogenesis [BR:
pow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IJ21_22110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ALS27608
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Position
2437497..2439176
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AA seq
559 aa
AA seq
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MSKKNNQDKLLIFALGGVGEIGKNMYVVQYGNDIVVVDAGLKFPEEDMLGIDIVIPDITY
LTDNRDKVRGILLTHGHEDHIGGLPYVLKHLNVPVYGTKLTLGLVEGKLKEAGLLGETKR
ILINADSEVQLGSIRASFFKTNHSIPDSVGVCLDTPEGIVVHTGDFKFDHTPVNDQFADL
QRIAEIGKRGVLALLSDSTNAERPGFTPSESNIGNELEAIFRKATQRIVIATFASNVHRI
QQVFNAAMATRRKIAVVGRSMVNVVTIASELGYLNIPEGMLIEPEEVNKMAADRVVVLCT
GSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPIPGNERYVGRTVDELFRLGANVIYG
PGSVSRVHVSGHGSQEELKLMLNLIRPKYFIPIHGEYRMLHHHAKLGESIGIEKDNIFII
DNGDTVEFQGGVARKSGKVPAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
DGKILSGPDIISRGFVYVRESEGLLDEANRIVTSTLNKLMNDNVNEWASLKTNVKEALGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaagaagaacaaccaggataagctgcttatttttgcgctgggtggcgttggcgaa
atcggaaaaaatatgtacgtcgtacaatatggaaacgatatcgtcgtcgtcgatgccggc
ctgaaattcccggaggaggatatgcttggcatcgatatcgtcattccggacattacgtac
ttgaccgacaatcgagacaaagtacggggaattttgcttacgcacggacatgaggatcat
atcggcggactgccgtacgtgctgaaacatttgaacgttccggtatacggtacgaaattg
acgctcggacttgtagaaggaaagctgaaggaagccggtcttctcggcgaaacgaagcgc
attctgatcaacgccgactcggaagtgcagctcggctcgattcgcgcgtcgtttttcaaa
acgaatcacagcattccggattctgtcggggtttgcctcgatacgccggaaggaattgtc
gttcatacgggtgacttcaagttcgaccatacgcccgtcaacgatcaattcgccgacctt
cagcgtatcgcggaaatcggcaagcgcggcgttctcgcgctgctgtcggacagcacgaat
gcggaacgcccgggctttacgccgtcggaaagcaatatcggaaacgaattggaagcgata
ttccgcaaagcgacgcagcgcatcgtcatcgcgacattcgcttcgaacgtgcaccgcatt
caacaagtcttcaatgccgcgatggcgacccgccgcaaaatcgccgtcgtcggccgaagc
atggtcaatgtcgtcactatcgcttccgagctcggctatttgaacattccggaaggcatg
ctgatcgagcccgaagaagtgaacaagatggcggcggaccgcgtcgtcgtgctttgcacg
ggcagtcagggcgagccgatgtcggcgctcacccgcatggcccgctcgacgcaccgcaag
gtggatattttgcccggggatacggtcattattgccgcaacgccgattcccggcaacgaa
cgttacgtcggcagaacggtcgacgaattgttccggcttggcgcaaacgtgatttacgga
cccggttccgtatcgcgtgtacacgtttccggtcacggcagccaagaggaactgaagctt
atgctgaacctgattcgtccgaaatatttcatcccgattcacggggaataccggatgctg
catcatcacgccaagctgggcgaatcgatcggcatcgagaaagacaacattttcattatc
gacaacggcgacacggttgaattccagggaggcgttgcgcgcaaaagcggcaaagtgcct
gccggcaacgtgctgatcgacggacttggcgtcggcgacgtcggcaacatcgtgcttcgg
gaccgcaagctgctgtcccaggacggcattctcgtcgtcgtcgtcacgctcagcaagcag
gacggcaaaattttgtccggtccggacattatttcccgcggcttcgtctatgtaagggag
tcggaaggactgcttgacgaagcgaatcgcatcgtcacgtcgacgctgaacaagctgatg
aacgacaatgtcaacgaatgggcttcgctcaagacgaacgtcaaggaggcgctcggacgt
tttctgtacgagcagacgcggcgccgcccgatgattttgcccattattatggaagtgtaa
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