Paenibacillus sp. 32O-W: IJ21_35840
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Entry
IJ21_35840 CDS
T04219
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pow
Paenibacillus sp. 32O-W
Pathway
pow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ21_35840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pow03019
]
IJ21_35840
03009 Ribosome biogenesis [BR:
pow03009
]
IJ21_35840
Enzymes [BR:
pow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IJ21_35840
Messenger RNA biogenesis [BR:
pow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IJ21_35840
Ribosome biogenesis [BR:
pow03009
]
Prokaryotic type
rRNA helicases
IJ21_35840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Pus10_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALS28972
UniProt:
A0A0U2V1M4
LinkDB
All DBs
Position
complement(3919257..3920786)
Genome browser
AA seq
509 aa
AA seq
DB search
MKTFADFGLEPKVLQAITELGFEEATPIQSKSIPIAMTGSDLIGQAQTGTGKTAAFGLPL
IHKIPASEDRIVALIMTPTRELAIQVSEEIGKLSRFKGLRTLPIYGGQEIGRQIRALKKR
PQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMEDITAILSLVPEERQTML
FSATMPPNIQKLAQQFLKNPVHVSVIPKQVSAPLIEQSYIEVQERQKFEALCRLLDIESP
ELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVSHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTPREIDHLRFIEKVTR
HRIARKPLPTMAEAIEGKQKVQAERLLELVHRDDIQEYKGIAIHLLEQYDSVHLLAAAIK
LLTGEKKDVDIELTPEEPIRAKKRRPDIRSSGRRFSGGSFGSNRGSGNYRGRGGSNRTYG
SGSSRDGGKGRFDSRGDYRKSKSEDYMDR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgctgatttcggcctggaaccaaaagtgttgcaggcgattacggagctt
ggattcgaggaagctacgccgattcaatccaagtcgatcccgattgcgatgaccggaagt
gacctgatcggccaggcgcagaccggcacaggcaaaaccgcggcattcgggcttccgctt
attcacaaaattccggcaagcgaggatcgcatcgtggcgctcatcatgacgccgacgcgc
gagcttgccattcaagtctcggaagaaatcggcaagctgtcgcggttcaaaggactgcgt
acgctgcctatctatggcggacaggaaatcggccgtcagattcgcgccttgaagaaacgt
ccacaaattattatcggcacgccgggacggttgcttgaccatatcaaccgtaaaacgatc
aagctggacgacgttcaaaccgtcgtgctggatgaagcggacgaaatgctcgatatgggc
ttcatggaggatattacggcgattttgtcgctcgtccccgaagagcggcaaacgatgctg
ttctccgctacgatgccgccgaatattcagaagctcgcccagcagtttctgaaaaatccg
gtacatgtctccgttattcccaagcaagtaagcgcgcctctgatcgaacaatcctacatc
gaggttcaggaacgccagaagttcgaagcgctgtgccggctgcttgatatcgaatcgccg
gaactcgcaattatattcggccgtacgaaacgccgggtggacgagcttagcgaagcgctt
cagaagcgcggctattcggccgacgggctgcacggcgacctgtcgcaaaaccagcgcgac
aatgtgatgcgcaaattccgggacggcagcatcgacgtccttgtggcgacggacgttgcc
gcgcgcgggcttgacgtatccggcgtttcgcatgttatcaatttcgaccttccccaggat
cccgaaagctacgtgcaccggatcggccgtaccggccgcgccggcaaggaaggatctgcg
tggagcttcgtaacgccgcgcgagatcgatcatctccgctttatcgagaaagtgacgcgc
caccgtattgcgcggaagccgctgccgacgatggcggaagcgatcgagggcaaacagaaa
gtgcaggcggaacggctgcttgaacttgttcatcgcgacgatattcaggaatataagggc
atcgccattcatttgctggagcagtacgattccgttcatctgcttgcggcagccatcaag
ctgctgaccggagagaagaaggatgtcgatatcgagctgacgccggaagagccgattcgg
gcgaagaagcgcagaccggacatccgttcgagcgggcgccgtttctccggcggatcgttc
ggcagcaaccgcggcagcggcaactaccgcggccggggcggcagcaaccgcacatacgga
agcggaagttcccgcgacgggggcaaaggccgcttcgacagccgcggcgattaccgcaaa
tcgaaatcggaagattatatggaccgctaa
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