Pandoraea oxalativorans: MB84_00200
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Entry
MB84_00200 CDS
T03840
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pox
Pandoraea oxalativorans
Pathway
pox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MB84_00200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pox03019
]
MB84_00200
03009 Ribosome biogenesis [BR:
pox03009
]
MB84_00200
Enzymes [BR:
pox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MB84_00200
Messenger RNA biogenesis [BR:
pox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MB84_00200
Ribosome biogenesis [BR:
pox03009
]
Prokaryotic type
rRNA processing factors
MB84_00200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKC68225
UniProt:
A0A0E3Y9H7
LinkDB
All DBs
Position
4633381..4636716
Genome browser
AA seq
1111 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWHAIEGAAHNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYALAEEAARSLEEDPAGYSKKKEDARPRQEAAVKGITP
EQPAPAAQPRPEPVAATVPAAAAPATGGFFGFIKRLFGVGAAAPAPTKAEEPAKPTARPP
RERHERPHQQNRNRRGNARDENKSGKDNAGQPAREGREGREGRDGRGARPERAERADRGE
RNERNDRGDRNERNERGDRNERQDRQEGRDKRERDDAQRQPALDVRAEEGREPREGRERG
SRRERGERRDRRQAEGAEGQQAVTQRAVPAAPLNAEQEELDQDRLTAQVEGAPQTGEEGE
QGGEERRRSRRRGRRGGRREREAGESQLNADGEQVEGDALEAVEGTRRAPTLTDESAEIA
ATDALVHATTPAIPAPAAATPVAHAEPTPARAAPVEAPAPVATVTEAAPAATPEVPAQSI
SEPISEPVTQAPTIAPVAPVNVAPLPTAAVAAAPVVPPVSAPLPVATPAPAQPTVPAEAL
TEIAATVAASSAPAEAAPAPVAESVQPTTQSTPSAPVQTVETAKPVEVAPAPVAPAAPAP
AAPVVMEAAAAVTEVVTQKATPVAVAPTLERGALESTLESVGLVWVHTDADKHRAAKEAA
AQVAPAPHVPRERRPSTPLNSGPMEQVETRS
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaacgccacgcagcaggaagaactgcgcgtggcaatcgtcgat
gggcaaaaactcatcgacatcgatatcgagacggccggccgcgaacagcgtaaaggcaat
atctacaagggtgtcatcacccgtatcgaaccctctcttgaagcctgcttcgtcaactac
ggcgaaggccgccacggcttcctgccgttcaaggaggtcgcccgcgcgtacttccgagaa
ggtgccgatgtgcgaaatgcgcgcattcaggacgccctctccgaaggccaggaactcatc
gttcaggtcgaaaaggaagaacgcggcaacaagggcgcagcactcacgacgttcatttca
ctggctggccgctatctggtgctgatgccgaacaacccgcgtggcggtggtgtttcgcgt
cgtatcgaaggcgaagaccgtcaggaactgcgcgagacgatgggccagctcgaactgccg
gaaggcatgagcatcatcgcccgcaccgcaggcatcggccgctcggccgaagaactgcag
tgggacctgaactacctgctgcaactctggcacgccatcgaaggcgccgcccacaacatc
gaattgccgcgcgattcggccctgatctatctcgaatcgagcctggtcatccgcgccatc
cgcgactatttccagccggatatcggtgaaatcctcatcgacacggaagaaatctccgaa
caagcacgcaacttcatgcaggtggtcatgcccgatcacctcaaccgcgtgaagcagtac
cgcgacgacgtgccgctgttctcccgtttccagatcgaacaccagatcgagacggcttac
tcgcgtcaggtgccgctgccctccggcggcgcgatcgtgatcgatcacaccgaagcgctc
gtctccatcgacgtgaactcggcacgcgccaccaagggcgccgacatcgaagaaaccgcc
ctgcgcaccaacctggaagctgccgacgaagtcgcgcgccagttgcgtctgcgcgacctc
ggcggtctgatcgtcatcgacttcatcgacatggagtcggccaagagccaacgtgaagtc
gaacaacgtgtgaaggatgcgctcaagcacgaccgtgcacgcgtccagatgggcaagatc
tcgcgtttcggcctgatggagctgtcgcgtcagcgtctgcgtccgtcgctgtccgaaggc
acgcacgtgacgtgcccgcgttgcaacggcaccggccacatccgcgatgcggaatcgtcg
gcactgcaagtcctgcgcatcattcaggaagaggccatgaaggagcacacggcagcgatc
cactgccaggtgccggtcgaagtctcggcgttcctgctcaacgaaaagcgtcaggaaatc
aacaagatcgaagcgcgcttcaaggttggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcattacaagctggagcgcctgcgcttcgacgatccgcgtctggatgcgccgaag
gctagctacgcgctcgccgaagaggctgcacgttcgctggaagaagatccggccggctac
agcaagaagaaggaagatgcgcgtccgcgtcaggaagccgccgtcaagggcatcacgccc
gagcagccggcaccggccgcgcaaccgcgtccggaacctgtcgccgcgaccgtgcctgcc
gcagcagcgccggccaccggtggcttcttcggtttcatcaagcgcctgttcggtgtcggc
gcagccgcgcctgcaccgaccaaggccgaagagccggccaagccgacggcacgtccgccg
cgcgagcgccatgagcgtccgcatcaacaaaaccgcaatcgccgcggcaatgcccgcgac
gagaacaagtcgggcaaggacaacgccggccagccagcccgtgagggtcgcgagggtcgt
gagggccgcgacggtcgtggcgcacgtccggaacgcgcagaacgtgcggaccgtggtgag
cgcaatgagcgtaacgaccgtggcgatcgtaatgaacgcaacgagcgtggtgaccgcaac
gaacgtcaggaccgtcaggaaggccgcgacaagcgcgagcgcgacgacgcacagcgtcaa
ccggcgctagacgtgcgtgccgaggaaggtcgtgaaccgcgtgaagggcgcgaacgcggc
agccgccgcgaacgtggcgagcgtcgtgaccgtcgtcaggccgaaggggccgagggtcag
caagccgtcacgcaacgcgccgtcccggccgcaccgctgaatgccgagcaggaagaactg
gatcaggatcgtctgacggctcaggtcgaaggcgcgccgcaaaccggtgaagaaggcgaa
caaggcggtgaagagcgtcgccgcagccgtcgtcgtggtcgtcgtggtggtcgtcgtgag
cgcgaagccggtgaatcgcaactgaacgccgatggcgaacaagtcgaaggcgatgccctg
gaagccgtcgaaggcacgcgtcgtgccccgacgctgacggacgaatccgccgaaatcgct
gcgaccgatgcgctggtccacgcaacgacgccggcgattccggcaccggcagcggccaca
ccggtggctcacgcagaaccgacgccggcacgtgccgcgccggtcgaagccccggcacct
gtcgccacggtgacggaagccgccccggccgcaacgccggaagtgccggcgcagtcgatt
tcggagccgatttcggaacctgtcacgcaggcaccgacgatcgcgccggtcgcaccggtc
aacgtcgcaccgctgccgacggctgcagtcgctgccgcaccggtcgtgccgccggtcagc
gccccgctgccggtcgcgacacctgccccggctcagccgacggttccggccgaagccctg
acggagattgccgccacggtcgctgcgtcgagcgccccggcagaagccgcaccggcgccg
gttgccgaatcggttcaaccgacgacgcaatcgacgccgtcggcaccggtccagacggtt
gaaactgccaagccggtggaagtcgcaccagccccggtcgcaccggcagccccagcccct
gcggcaccggtcgtgatggaagccgccgcggcggtgacggaagtcgtgacgcagaaggcg
accccggtggcggttgccccgacgctggagcgcggtgcactggaatcgacgctggaaagc
gtgggcctggtctgggtccatacggacgccgacaagcaccgtgccgccaaggaagccgct
gcgcaggttgcaccggcaccgcacgtgccgcgtgaacgccgcccgtccacgccgctcaac
agcggtccgatggagcaggtggaaacgcgctcgtga
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