KEGG   Pandoraea oxalativorans: MB84_03250
Entry
MB84_03250        CDS       T03840                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pox  Pandoraea oxalativorans
Pathway
pox02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pox00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    MB84_03250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pox03021]
    MB84_03250
Transcription machinery [BR:pox03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     MB84_03250
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_24 HTH_20 GerE PhyR_sigma-like HTH_IclR HTH_29 HTH_40 HTH_28 HTH_10 HTH_11 HTH_17 HTH_5 TnsD HTH_38
Other DBs
NCBI-ProteinID: AKC68685
UniProt: A0A0E3Y8W5
LinkDB
Position
complement(5300158..5300691)
AA seq 177 aa
MPADDTLQRDTSLGTLNTLQGLYNDHHGWLHGWLHRKTGCSHRAADLAHDTFVRLLERDP
PRLLASPRAFLTTVAQRVLYNYWRREQIERAYLDALAQQPEALAPSPEARAIVLETLLEI
DRCLDGLPPLVKRAFLLAQLDGLTHPEIAAELGISLATVKRHLVRAGTQCFFAMGMA
NT seq 534 nt   +upstreamnt  +downstreamnt
atgcccgccgacgacacgctgcagcgcgacacttcgctgggtacgctcaatacgctgcag
ggactctacaacgaccatcacggctggcttcacggctggctgcatcgcaagaccggctgc
tcgcatcgcgcggccgatcttgcgcatgacactttcgtccgtctgctggagcgcgatccg
ccccgcttgctggcgtcgccgcgcgcgttcctcacgaccgtcgcgcagcgcgtcctctat
aactactggcgacgcgagcagatcgagcgcgcctatctcgacgccctggcgcaacaaccc
gaagcgcttgccccgtctcccgaagcgcgcgccatcgtgctggagacgctgctcgaaatc
gaccgctgtctcgacggtctgccaccgctcgtcaaacgtgccttcctgctggcgcaactg
gacggcctcacgcatcccgaaatcgccgccgaactcggcatttcactggcgacggtgaaa
cgtcacctcgtgcgtgcgggcacgcagtgcttcttcgcgatggggatggcatga

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