Pandoraea oxalativorans: MB84_13340
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Entry
MB84_13340 CDS
T03840
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pox
Pandoraea oxalativorans
Pathway
pox03410
Base excision repair
pox03430
Mismatch repair
pox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MB84_13340
03430 Mismatch repair
MB84_13340
03440 Homologous recombination
MB84_13340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pox03400
]
MB84_13340
DNA repair and recombination proteins [BR:
pox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MB84_13340
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MB84_13340
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MB84_13340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AKC70255
UniProt:
A0A0E3YE36
LinkDB
All DBs
Position
complement(1922256..1923953)
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AA seq
565 aa
AA seq
DB search
MTDIVTRRVDETTADTLSRDGVHPVLARLFAARGVLESTETETALARLIPPTQLKGAQEA
AVFLADAIAAGKRMLVVADYDCDGATACAVAVRGLRMFGANVEYLVPNRFEYGYGLTPEI
VTLAARGKQGPPDVLITVDNGIASLDGVAAAQLLGIEVVVTDHHLPGSELPNARCIVNPN
QPGCEFPSKNLAGVGVMFYVLLALRAELRGRGAFDAREQPRLDTLLDLVALGTVADVVKL
DANNRILVAQGLSRMRAGRMHPGINALFRAAARNARQAGSFDLGFGLGPRLNAAGRLADM
SLGIECLLTDDDARAWTLAQELDAMNRERREIEAGMQQEALADLARFDPRAATTLCAFNE
TWHQGVIGIVAARLKERFYRPTIVFAPGDDGQIKGSGRSIPGFHLRDALDLVTKREPGLI
GKFGGHAMAAGLTIAADALPRFQAAFEAVGQEWLDEKTLSRVIETDGDIGDDCFVPPFVA
MLDAQVWGQGFPPPVFSGEFDVLSQAILKDKHLKLQLGRGRMRFNAIWFNHADTLPSRAQ
FAYRLAADTFNGVSRVQMIIEHAQG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatatcgtcacccgacgcgtcgacgagacgaccgccgacaccctctcgcgtgac
ggcgtccaccccgtgctggcccgtctgttcgccgcgcgcggcgtcctcgagagcaccgag
accgaaaccgccctcgctcgcctgattccgccgacgcagctcaagggagcgcaagaggcc
gccgtattcctcgcagacgccatcgccgcgggcaaacgcatgctcgtcgtggccgactat
gactgcgatggggcgacggcttgcgccgtggccgtacgcgggctgcgcatgtttggcgcg
aacgtcgagtatctggtgccgaaccgcttcgaatatggttacggactcacaccggaaatc
gtgacgctcgccgcacgcggcaaacaaggtccgccggatgtcctgattaccgtcgacaac
ggcatcgccagcctcgatggcgtggctgctgcgcaattgcttggcattgaagtcgtggtc
accgaccaccacttgccgggtagcgaactgcccaacgcgcgttgcatcgtcaatccgaat
cagccgggctgtgagttccccagcaagaatttggcaggggtcggcgtgatgttttacgtg
ctgctggcgttgcgcgccgaattgcgtggacgtggcgctttcgacgcacgcgaacaaccg
cggctcgatacgttactggacctcgtcgcgctgggcaccgtggccgacgtggtcaagctc
gacgccaacaatcgcattctggtggcacagggcctgtcgcgtatgcgcgcaggacggatg
caccccggcatcaacgccctctttcgcgccgccgcccgcaacgcacggcaggccgggagt
ttcgatctcggcttcggtctgggcccgcgcctgaacgccgccggacgcctcgcggatatg
tcgctcggcatcgaatgcctgctgacggacgacgacgcccgcgcctggacgctcgcgcag
gaactcgacgcgatgaatcgcgagcgtcgcgaaatcgaagcgggcatgcagcaggaagcg
ctggccgacctggcgcgtttcgatccacgtgccgcgaccacgctttgcgcgtttaacgaa
acgtggcatcaaggcgtgatcggtatcgtggcggcccgcctcaaagagaggttctaccgc
ccgaccatcgtgttcgcaccgggggacgacggtcagatcaaaggatccggacgctcgatc
cccggcttccatttgcgcgacgcgctcgacctcgtcaccaaacgcgaacccggcctgatc
ggcaagttcggtggccacgcgatggcggccggtctcacgatcgctgccgacgcgctgccg
cgttttcaggccgcgttcgaagccgtcggacaggaatggctcgacgagaagacgctctcc
cgcgtgatcgaaaccgacggcgacatcggtgacgattgcttcgtcccacccttcgtcgcc
atgctcgacgcccaagtctggggacagggctttccgccccccgtgttctccggcgagttc
gacgtgctctcgcaagccatcctgaaagacaagcacctgaagctgcaactcggacggggc
cgcatgcgcttcaacgcgatctggttcaatcacgccgacacgttgccaagccgcgcgcaa
ttcgcgtatcgcttagctgcggacacgtttaatggcgtatcgcgtgtgcaaatgatcatc
gagcacgctcagggctga
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