Pandoraea oxalativorans: MB84_23665
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Entry
MB84_23665 CDS
T03840
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pox
Pandoraea oxalativorans
Pathway
pox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MB84_23665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pox03019
]
MB84_23665
Enzymes [BR:
pox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MB84_23665
Messenger RNA biogenesis [BR:
pox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MB84_23665
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Utp25_C
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKC71806
UniProt:
A0A0E3YE97
LinkDB
All DBs
Position
complement(4325830..4327338)
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AA seq
502 aa
AA seq
DB search
MADVNAVPIPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPDANTSASPARHPVRALILTPTRELADQVADNVRLYAAHTALRNTVV
FGGVDMNPQKDALRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNDIKRLASSYLANPVTIEVARRNATADTVEQVVYEVDE
DDKRAAVVQILNERDLKQVIVFVNSKVGASRLARQLERDGIVTAAIHGDKSQNERMQALE
AFKQGGIRALVATDVAARGLDISDLPGVINYDLPYNPEDYVHRIGRTGRAGASGEALSLC
APDERKQLVEIEKLIKRELKRGELVMERRSRSRDDRGDRYERSDRGERAERGERSDRGER
HSRHDGLRAGRSGGSTPRRVRPEDEFFYKPYEPSPSAGESQRDHRTSIDAAAPTTFGAPS
EKAPKRQVAALLAGFPRKAQDR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaaatgctgttccgatccccggcttcgatagctttgggctgcatgcggac
atcttgcgggccatcgccgagcagggctacacccaaccgacccccattcaggcacaggcc
attccggtggtgctgtccggtcgcgacgtcatgggtgccgcacaaaccgggaccggcaag
actgccagcttctcgctgccgatcatccagcgcctgctgcccgatgccaacacgagtgca
tcgcccgcccgtcacccggtgcgcgcgctgatcctcacgccgacgcgcgaactcgccgat
caggtggctgacaacgtgcgcttgtacgcggctcatacggcgttgcgcaacaccgtggtg
ttcggcggcgtcgacatgaatccgcagaaggatgccctgcgccgtggcgtcgaaattctg
atcgccacgccgggccgtctgctcgaccacgtcgaacagaagacggtgaacctgagccag
gtgaagatgctggtgctcgacgaagccgaccgcatgctcgacatgggcttcctgccggat
ctccagcgcattctgaatttgctgccgaagcagcgccagacgctgctcttctcggctacg
ttctcgaacgacatcaagcggctcgcatcgagctacctcgcgaacccggtcacgatcgaa
gtggcgcgtcgcaatgcgacggccgatacggtcgaacaagtcgtctacgaagtggatgaa
gacgacaagcgtgcggctgtggtccagattcttaacgaacgcgatctgaagcaggtcatc
gtgttcgtgaacagcaaggtcggcgcaagccgtctggcgcgtcagcttgagcgtgacggc
atcgtgacggccgccattcacggcgacaagtcgcagaacgagcgtatgcaggcgctcgag
gcgttcaagcaggggggtatccgcgcgcttgtggcgaccgacgtcgctgcacggggtctg
gacatctccgatttgccgggcgtcatcaactacgatcttccgtacaacccggaagattac
gtgcaccgcatcggccgtaccggtcgtgccggcgcgtccggcgaagcgctctcgctgtgc
gcaccggacgagcgcaagcaactcgtggaaatcgagaagctgatcaagcgcgaactcaag
cgtggcgagttggtgatggagcgccgcagccgttcgcgtgacgaccgtggcgatcgctac
gagcgcagcgaccgcggtgagcgtgcggaacgtggcgagcgcagtgatcgtggcgagcgt
catagccgtcatgacggcctgcgtgctggccgtagcggcggcagcacgccgcgtcgcgtg
cgtccggaagatgaattcttctacaagccgtacgagccgtcgccgtcggcgggtgagtcg
cagcgcgaccatcgcacgtcgatcgacgctgctgcaccgacgaccttcggggcgccgtcg
gaaaaggcccccaagcgtcaggtcgccgcactgctcgcgggcttcccgcgcaaggcgcag
gaccgctaa
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