Onion yellows phytoplasma OY-M: PAM_227
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Entry
PAM_227 CDS
T00154
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
poy
Onion yellows phytoplasma OY-M
Pathway
poy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAM_227 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poy03021
]
PAM_227 (rpoA)
03400 DNA repair and recombination proteins [BR:
poy03400
]
PAM_227 (rpoA)
Enzymes [BR:
poy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAM_227 (rpoA)
Transcription machinery [BR:
poy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAM_227 (rpoA)
DNA repair and recombination proteins [BR:
poy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAM_227 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
BAD04312
UniProt:
Q6YQZ5
LinkDB
All DBs
Position
256169..256912
Genome browser
AA seq
247 aa
AA seq
DB search
MKNIKFIKPFFVEEIDENPISGKFIIKPLERGYGITVGNALRRVLLSSLPGTAIVNVKIQ
GVEQEFTTIPGVYEDVMTIILNLKKIVFAVDDESDDFEEKLELIAKGPQRLTASSFELPA
GVKIINPDHYITTLSDDVCFHMTVTLKKGIGYVGAKDNKVHGENQVGVIAIDSLFTPVVN
VSYQVEKKLGNKDELTIEITTNGALLAKEALATAASILVDHFNVLVELSQKPAHVEFVSE
SKKEAHN
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatattaaatttattaaacctttttttgttgaagaaattgatgaaaatcccatt
tctgggaaattcatcattaaacctttagaaagaggatacggcattactgtaggaaacgct
ctaagaagagttttgttatcttctttgcctggtactgctattgtaaatgttaaaattcaa
ggagtagaacaagaatttaccactattcctggcgtttatgaagatgtcatgacaattatt
ttaaatttaaaaaaaattgtttttgccgtagacgacgaatcagatgattttgaagaaaaa
ctagaactaattgccaaaggaccacaacgcctaaccgcttcttctttcgaactgcctgca
ggagttaaaatcatcaaccccgatcattacattaccactctttctgatgatgtttgcttt
catatgacagttacccttaaaaaaggcattggttatgttggcgccaaagacaacaaagtt
cacggcgaaaatcaagtaggcgttattgcaattgattctttatttactcctgttgtcaat
gtttcttatcaagtagaaaaaaaattaggcaacaaagacgaattaactattgaaattacc
actaacggcgctcttttagctaaagaagctttagcaactgcagctagcattttagtagat
cattttaatgttttagtagaattaagccaaaaacctgctcatgtagaatttgtttccgaa
tctaaaaaagaagctcacaattag
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