Onion yellows phytoplasma OY-M: PAM_261
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Entry
PAM_261 CDS
T00154
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
poy
Onion yellows phytoplasma OY-M
Pathway
poy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAM_261 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poy03021
]
PAM_261 (rpoC)
03400 DNA repair and recombination proteins [BR:
poy03400
]
PAM_261 (rpoC)
Enzymes [BR:
poy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAM_261 (rpoC)
Transcription machinery [BR:
poy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAM_261 (rpoC)
DNA repair and recombination proteins [BR:
poy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAM_261 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Acyl-CoA_ox_N
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BAD04346
UniProt:
Q6YQW2
LinkDB
All DBs
Position
297849..301910
Genome browser
AA seq
1353 aa
AA seq
DB search
MSDNRLFTSVETLNLSSPVLEKLKLSGINTLEDFNTFTLEELRLLLQEAFLEVLPILKNF
ALPRNLQNLDLSEAVINILTELGMEDFQDLLQTKMAVLTKAFETNPLAFQKLNDLFKLYN
HFPSISSDKEYGSRDYDYFKIRLAAPEEIRQWSYGEVTSYETINYRTYKPEISGLFCQKI
FGPVVDFQCACSKKQVSIKSQFCNKCGVEFTETKVRRERMGHIELQTPIVHTWYLNSSPS
RLAILLNIKTKQLEEIVYYVSYVVIDPGKTEFKPKEIITETQYSEALYEFGNAFVALTGA
EAVKKLLENLNLEKTIKVLRKSLSENSKQKRESIIKRLEIIESFHQSDNKPEWMVMDVIP
VLPPGLRPMVPLDGGRFATTEVNDLYRRILNRNNRLKKQMLQKAPRLIIKNEKRMLQEAV
DALFDNAKTSKKNVNNVEKNRPLKSLSEMLRGKQGRFRQNLLGKRVDYSGRSVIIVGPDL
EMHQCGVPREMAIILFKPFILKKLQETKGIDKKNANTIYEKMNEEVWNALEEVVKEHPVL
LNRAPTLHRLGIQAFDPKLIDGKAIRLHPLVTPAFNADFDGDQMAIYVPLSLEAQAEARL
LMLVSNNILDPKNGNPVVTPSQDMVLGNYYLTIEEKKDRTINSYDAAQRTAEHQYKHRNE
GAFFADINEAKTAYQNKEIHLHTRIFIKPQAINLSFTEEQRQKYLMTTLGKLIFNDILPP
SFPYINEPTQFNLDVKTPDAYFLAPGTNPKQFLKKLPTPKPFNKKFLSMIIACFFKQMKI
TETSKMLDHIKNLGFKYSTIAGITVSFADINTYSNKQELLQEVEARNIQIETWYNDGFLT
DAERRRLVINEWKNIRDEIQEGLMKEFQQDNHIFMMSESGARGSVSNFTQLAGMRGLMNN
PKGEIIEVPVKASFREGLKVSEFFISTHGARKGSTDTALKTAESGYLTRRLVDVTQDIVV
IKEDCNSDRGFVVEAMISDGKEIVSLKQRIMGRFASCDICHPKTNALIIARNELITESKA
QEIITAKIKKVPIRSILTCNCEYGICAKDYGVNLATNKLVEIGEAVGVIAAQSIGEPGTQ
LTMRTFHTGGVASASDITQGLPRIEELFEVRKPKGKALISELKGKIKKIDKIRSQNPEIV
ITEENDPDTEHRYILEPNVDILVSKNNSVYPGQKLTSGSVDLKELLRVAGTTEAQKYILE
EVQKVYRAQNVYISDKHIEIIIHQMFKQILIIDEGDTQLLPGTEITINNFKKANLKMLEE
NKLLAVGRPIILGITRSSLRSDSLLSAASFQETTKILIDAAIKGKTDHLYGLKENVIIGG
LIPAGTGILETTLFKYPKEPATTSELAEKTNQN
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataacagattatttacttcagtagaaactttaaatctttcatctccagtttta
gaaaaattaaaactttctggaatcaatactttggaagattttaacacttttactttagaa
gagttaaggcttttactgcaagaagcttttttagaagttttacctatcctcaaaaacttc
gccctacctcgcaatttacaaaatctagatttgagtgaagccgttattaacattcttact
gaactaggaatggaagattttcaagatcttttacaaactaaaatggctgtccttacaaaa
gcatttgaaaccaatccccttgcttttcaaaaattaaacgacctatttaagttatacaac
cacttcccttctatttcatctgacaaagaatacggtagtagagattatgattattttaaa
atccgtctagctgctcctgaagaaatcagacagtggtcttatggtgaggttactagctac
gaaacaattaactatcgcacctataaaccagagatatcaggattattttgtcaaaagatt
tttggtccagtagttgatttccaatgtgcttgttctaaaaaacaagtcagcatcaaaagt
caattttgtaacaaatgtggagttgaatttaccgaaaccaaagtgcgtcgtgaaagaatg
ggacacatcgaattacaaacccccatcgtccacacttggtaccttaactcttctcccagc
cgtttagctattcttttaaacatcaaaactaaacaattagaagaaatagtttattatgtt
tcttacgttgtaattgatcctggaaaaaccgaattcaaacctaaagaaattattacagaa
acccaatacagtgaagctctttatgaatttggaaacgcttttgtagctttaacaggtgcc
gaagcggttaaaaaattactagaaaatctcaatttagaaaaaactatcaaagtccttcgc
aaatctttatcggaaaattccaaacaaaaaagagaaagcattattaaaagactagaaatc
atcgaatcttttcatcaatcagacaacaaacctgaatggatggtaatggatgttattcct
gtattgcctccgggattaagaccgatggttcctttagatggtggtcgttttgccactact
gaagtcaacgatctttaccgccgcatccttaatcgcaacaatcgtttaaaaaaacaaatg
ctccaaaaagctcctcgtttaatcattaaaaatgaaaaaagaatgctacaagaagcagtt
gatgctttatttgataatgccaaaactagcaaaaaaaacgttaacaacgtcgaaaaaaat
cgcccgcttaaatctttatccgaaatgctacgcggtaaacaagggcgtttccgtcaaaat
cttttaggtaaaagagtggattattcgggacgatccgtaattattgtaggtcctgattta
gaaatgcaccaatgcggtgtgcctcgtgaaatggcaattattttgttcaaacctttcatt
ttgaaaaaactacaagaaaccaaaggaattgacaaaaaaaacgccaacaccatttatgaa
aaaatgaatgaagaagtttggaacgccttagaagaagtagtcaaagaacacccggtcctt
ttaaaccgcgccccaacactacaccgtttaggaattcaagcttttgatcctaaattaatt
gacggtaaagccattcgcctccaccctttagttacgcctgcctttaatgccgattttgat
ggcgaccagatggcaatttatgtccctctttctttagaagcccaagccgaagcacgctta
ttgatgcttgtttcgaacaacattttagaccctaaaaatggtaatccagtagtaacacct
tcccaagatatggttttaggaaactactatttaaccattgaagaaaaaaaagatcgcact
ataaacagctatgatgctgcccaaagaactgcagaacaccaatacaaacatcgcaatgaa
ggagctttttttgctgacatcaacgaagccaaaaccgcttatcaaaataaagaaatccac
cttcacacaagaatttttatcaaaccacaagcaattaatttatcatttaccgaagaacaa
cgtcaaaaatatttaatgactactttaggaaaattaatttttaatgacattttgcctcca
agtttcccctacattaacgaaccaactcagtttaatttggatgtcaaaacccctgatgct
tattttttagctccaggaaccaaccccaaacaattcctaaaaaaacttcccacccctaaa
ccttttaacaaaaaattcctatctatgattattgcatgttttttcaaacaaatgaaaatt
acagaaacttccaaaatgttagatcacatcaaaaacttaggtttcaagtattctactatc
gcaggaattacagtttcatttgcagacatcaatacttactccaataaacaagaattgtta
caagaagtagaagcccgcaatattcaaattgagacttggtacaacgatggttttttaaca
gatgccgaacgtcgtcgtttagtaattaacgaatggaaaaatattcgtgatgaaattcaa
gaaggcttgatgaaagaatttcaacaagacaaccacatttttatgatgagcgaaagtggc
gcacgtggtagtgtttctaactttactcaattagcagggatgagagggttaatgaataac
cctaaaggtgaaattattgaagtccctgttaaagcttctttccgagaaggtctgaaagtt
tctgagtttttcatctctactcacggagcccgtaaaggttcaactgacactgccctcaaa
acagccgagtcaggttatctaacgcgtcgtttagttgacgtaactcaagatattgttgtt
atcaaagaagactgcaatagtgaccgcggttttgttgtagaagctatgattagcgacggc
aaagaaattgtttcactcaaacaacgcattatgggacgctttgctagttgcgacatttgt
catcccaaaaccaacgcccttattatagcgcgcaatgaattaattactgagtccaaagcc
caagaaattattactgccaaaattaaaaaagttcctattagaagcattttaacttgtaat
tgtgaatatggtatttgcgccaaagactacggcgtcaatctagctaccaataaattagta
gaaattggcgaagctgttggtgttattgctgctcaatccattggggaaccaggaactcaa
ttaactatgagaactttccatactggaggagttgcttctgcctcagatattactcaaggt
cttccaaggatcgaagaattatttgaagtacgcaaacctaaaggaaaagcgctaatcagc
gaattaaaaggaaaaatcaaaaaaattgataaaatccgttcccaaaatccagaaattgta
atcacagaagaaaatgaccctgacacagagcaccgttatattttggaacctaatgtcgat
attttagtaagcaaaaacaacagtgtttatcccggtcaaaaactaacttctggttcggtt
gatctaaaagaacttttaagagtggcaggcacaacagaggctcaaaaatacatcttagaa
gaagtacaaaaagtttatcgtgcccaaaatgtttatatcagcgacaaacacatcgaaatt
attattcatcaaatgtttaaacaaattttaattattgatgaaggtgatactcaactttta
cctggcacagaaattactattaataactttaaaaaagctaatttaaaaatgttagaagaa
aacaaacttttagcagtggggcgccccattattttaggaattacgcgttcttctttaaga
agtgattctttactgtcagctgcatctttccaagaaactactaaaattctaatcgatgct
gccatcaaaggaaaaaccgaccatctttacggacttaaagaaaatgttattattggtggc
ttaattcctgcaggaacaggtattttagaaactactttatttaaatatccaaaagaacct
gcaaccacttctgaacttgctgaaaaaactaaccaaaattaa
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integrated database retrieval system
