Onion yellows phytoplasma OY-M: PAM_279
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Entry
PAM_279 CDS
T00154
Symbol
topA
Name
(GenBank) topoisomerase IA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
poy
Onion yellows phytoplasma OY-M
Brite
KEGG Orthology (KO) [BR:
poy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poy03032
]
PAM_279 (topA)
03400 DNA repair and recombination proteins [BR:
poy03400
]
PAM_279 (topA)
Enzymes [BR:
poy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PAM_279 (topA)
DNA replication proteins [BR:
poy03032
]
Prokaryotic type
DNA Topoisomerases
PAM_279 (topA)
DNA repair and recombination proteins [BR:
poy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PAM_279 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAD04364
UniProt:
Q6YQU4
LinkDB
All DBs
Position
320143..322086
Genome browser
AA seq
647 aa
AA seq
DB search
MKSKVIIVESPAKTKTLSRFLNDEFLILSSKGHIRDLSLKGKDRMGIDIEKGFIPKYSII
KEKDNIVETLIQKTKGKEVLLATDPDREGEAIAWHLSQILNLDPQKTNRIVFREITKEAV
LKALQQPRKIDELLVFSQETRRMLDRIIGFKLSRLVRRLKSQSAGRVQSVALKLIVDLEE
KIKAFVPEEYYIITAFFKDFQAEYQNPYKGKTKAKEAFKIVQQITDKPFLVKELKQKEAK
QSPKPPFITSTLQQEAINSLNITSNQVMRVAQKLYEGVDILGESIGLITYMRTDSQRLAD
SFVKDAQKLIKTQYGKEYLGTYKTNKKAQSQDAHEAIRPTDLSKTPESLAPHLDKYENKL
YKLIYQRTLASLMTPAIFQKTQVFFEVANHLFLTEGLIKTFDGYQKILQDGTKDKIIPSF
KLNETYLPQEIQNLQKFTNPPARFSESTLIKTLEKLNIGRPSTYSQIIFTLKKRIYVDLV
EKRFVPTEQGILTAKNLELFFKQIIDVKYTAKMEENLDKISSGLVNNKELLQEFYDAFKQ
LYQIADQKLEKPKDIETDQKCNLCNAPLLIKKGRYGIFLGCSRFPECKNIVSLKEKSSSV
ETNPSMQTDQKCNLCNAPLLIKKGRYGNFLGCSRFPECKNIVKIKKT
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaaaagttattatagtagaatctcctgctaaaaccaaaactttaagccgtttt
ttaaatgacgaatttttaattttatcttccaaaggtcatattagagatttgtcgctaaaa
ggaaaagacagaatgggaattgacatcgaaaaaggatttattcctaaatacagcattatc
aaagaaaaagacaatatcgtagaaactcttatccaaaaaactaaaggcaaagaagtgcta
ttagcaaccgatcctgatcgcgaaggagaagcaattgcttggcatttatcacaaattctt
aatttagacccccaaaaaactaatagaattgtttttcgagaaattaccaaagaagcagtc
ttaaaagctttgcaacaacctcgcaaaatcgatgaactattagtgttttcacaagaaact
cgcagaatgctagaccgtattattgggtttaaactgtcgcgtttggtaaggagactcaaa
tcacaatcagcaggaagagtgcaatcagttgcccttaaattaattgttgatttagaagaa
aaaataaaagcttttgtccctgaagaatactatattattactgctttttttaaagatttt
caagcagaataccaaaatccttacaaaggcaaaaccaaagccaaagaagcttttaaaatt
gtccaacaaatcacagataaaccctttttagttaaagaattaaaacaaaaagaagccaaa
caatcacccaaaccaccctttattacatctaccctgcaacaagaagccatcaacagccta
aatataacttctaatcaagttatgagagttgctcaaaaactttatgaaggagttgatatt
ttaggtgaatctatagggttaattacttatatgagaacagattcgcaaagacttgcagac
agctttgttaaagatgctcaaaaattaattaaaacacaatatggcaaagaatatttaggt
acttacaaaaccaataaaaaagctcagtcgcaagacgctcacgaagctataagacccact
gatttatccaaaacgcctgaaagcctagcccctcatcttgataaatacgaaaataaactc
tataaacttatttatcaaagaactttggcttctttaatgacacctgccatatttcaaaaa
acccaagttttttttgaagttgcaaaccatctttttttaactgaaggtttgataaaaact
ttcgatggctatcaaaaaattttgcaagatggcaccaaagacaaaattattccttccttt
aaattaaatgaaacttatttgcctcaagaaatccaaaatttacaaaaatttactaatcct
ccagcacgcttttctgaatccactttgattaaaactttagaaaaactaaatattggaagg
ccttctacttactctcaaatcatttttaccctcaaaaaaagaatttatgttgatttagta
gaaaaacgttttgttcctaccgaacaaggaattttgactgctaaaaacttagaattgttt
ttcaaacaaattattgatgttaaatatactgccaaaatggaagaaaatttagataaaatc
tcttcaggattagttaataataaagaattattgcaagaattttatgatgctttcaaacaa
ctttatcaaatagccgatcaaaaattagaaaaaccaaaagatatcgaaaccgatcaaaaa
tgtaatttatgcaatgcccctttactcatcaaaaaaggacgctatggtatttttttaggt
tgtagtcgctttcctgaatgtaaaaatattgtttctttaaaagaaaaatcaagttctgta
gaaacaaatccttctatgcaaaccgatcaaaaatgtaatttatgcaacgctcctttactc
atcaaaaaaggacgctatggtaattttttaggttgcagtcgctttcctgaatgtaaaaat
attgttaaaattaaaaaaacttaa
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