Onion yellows phytoplasma OY-M: PAM_453
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Entry
PAM_453 CDS
T00154
Symbol
srmB
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
poy
Onion yellows phytoplasma OY-M
Brite
KEGG Orthology (KO) [BR:
poy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poy03019
]
PAM_453 (srmB)
03009 Ribosome biogenesis [BR:
poy03009
]
PAM_453 (srmB)
Enzymes [BR:
poy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAM_453 (srmB)
Messenger RNA biogenesis [BR:
poy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAM_453 (srmB)
Ribosome biogenesis [BR:
poy03009
]
Prokaryotic type
rRNA helicases
PAM_453 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PhoH
DsrH
HVSL
Motif
Other DBs
NCBI-ProteinID:
BAD04538
UniProt:
Q6YQC2
LinkDB
All DBs
Position
501698..502771
Genome browser
AA seq
357 aa
AA seq
DB search
MQNYIQKKILQLQFQTLTPIQKEVFSQFEKPGNLVGIAPTGTGKTHAYLLPILSKIDFQK
PFTQAIILVPTNDLVFQVWEMFKQIEKTNFTKILYGGMDKQKAIATFEKKQPPLIIATPD
KLLEYAFKLKKINLKYVSYLVLDEADMMFDEVFLTSLDPLINHLKAKILLFSATITEQLK
PFINRYFGKSTFIDVYKQSNLNRTFYVLETTTSRMQTLIHLTKVLNPYLALVFVNEKKEQ
ELVFQTLQNDSLKLLNYNSALSVKQRKQSLKAIHKLKYQYVIASDLAARGIDFDASCVIH
YNLPSHLEFFFHRSGRTSRMGKKGEIIVLYDPQDIKQKDKINKINSIRNYFSSSLFK
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaactatattcaaaaaaaaatattacaacttcaattccaaactttaactcccatc
caaaaagaagtcttttcacaatttgaaaaaccaggtaatctagtaggaattgctcctaca
ggaacaggcaaaacccatgcttatcttttaccgatattaagtaaaattgatttccaaaaa
ccatttactcaagcaattattttagtccctaccaatgatttagtatttcaagtatgggaa
atgtttaaacaaattgaaaaaactaattttaccaaaattctttacggaggaatggataaa
caaaaagcaattgctacttttgaaaaaaaacaacctccattaattattgcaactcccgat
aagttattagaatacgcgtttaaactaaaaaaaattaacttaaaatatgtatcttattta
gtccttgatgaagctgatatgatgtttgatgaggtatttttaacttccctagacccttta
attaatcatcttaaagccaaaattttattattttcagctaccattaccgaacaattaaaa
ccttttattaatcgttattttggtaaatctacttttattgatgtttataaacaaagtaat
cttaatcgtactttttatgtattagaaacaactacaagcagaatgcagaccttaattcat
cttaccaaagtccttaatccttatttagcactcgtatttgtcaatgaaaaaaaagaacaa
gaattagtatttcaaactttacaaaatgacagtctcaaattgcttaattacaactctgct
ttatcagttaaacaaagaaaacaaagccttaaagctatccataaattaaaatatcagtac
gtaattgcatcagatcttgcagctagaggaattgattttgatgcttcttgtgttattcac
tacaacttaccttcacaccttgaattttttttccacagaagtggtagaacatcaagaatg
ggcaaaaaaggtgaaatcattgttttgtacgacccccaagacattaaacaaaaagacaaa
attaataagattaattcaattaggaattacttttcatcaagcctctttaaataa
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